Lista de obras - Stefan Schuster - Dominio Público Uruguay

A Genome-Scale Database and Reconstruction of Caenorhabditis elegans Metabolism

artículo científico publicado en 2016

A method for classifying metabolites in topological pathway analyses based on minimization of pathway number

artículo científico publicado en 2003

A theoretical approach to the evolution and structural design of enzymatic networks: linear enzymatic chains, branched pathways and glycolysis of erythrocytes

artículo científico publicado en 1987

Adenine and adenosine salvage pathways in erythrocytes and the role of S-adenosylhomocysteine hydrolase. A theoretical study using elementary flux modes

artículo científico publicado en 2005

Against the stream: relevance of gluconeogenesis from fatty acids for natives of the arctic regions

artículo científico publicado en 2012

Biochemical frequency control by synchronisation of coupled repressilators: an in silico study of modules for circadian clock systems

artículo científico publicado en 2011

Calculability analysis in underdetermined metabolic networks illustrated by a model of the central metabolism in purple nonsulfur bacteria

artículo científico publicado en 2002

Calculating as many fluxes as possible in underdetermined metabolic networks

artículo científico publicado en 2002

Can single knockouts accurately single out gene functions?

artículo científico publicado en 2008

Can sugars be produced from fatty acids? A test case for pathway analysis tools

article

Can sugars be produced from fatty acids? A test case for pathway analysis tools.

artículo científico publicado en 2009

Can the whole be less than the sum of its parts? Pathway analysis in genome-scale metabolic networks using elementary flux patterns

artículo científico publicado en 2009

Causes of upregulation of glycolysis in lymphocytes upon stimulation. A comparison with other cell types

artículo científico

Challenges in microbial ecology: building predictive understanding of community function and dynamics ⬇️

artículo científico

Combining metabolic pathway analysis with Evolutionary Game Theory: explaining the occurrence of low-yield pathways by an analytic optimization approach

artículo científico publicado en 2011

Comparative Study on Alternative Splicing in Human Fungal Pathogens Suggests Its Involvement During Host Invasion

scientific article published on 02 October 2018

Comparison of network-based pathway analysis methods

artículo científico publicado en 2004

Computing the shortest elementary flux modes in genome-scale metabolic networks

artículo científico publicado en 2009

Computing the various pathways of penicillin synthesis and their molar yields

artículo científico publicado en 2015

Control analysis of metabolic systems involving quasi-equilibrium reactions

artículo científico publicado en 1998

Cooperation and cheating in microbial exoenzyme production--theoretical analysis for biotechnological applications

artículo científico publicado en 2010

Decision-making of the benthic diatom Seminavis robusta searching for inorganic nutrients and pheromones

artículo científico publicado en 2018

Defining control coefficients in non-ideal metabolic pathways

article

Detecting and investigating substrate cycles in a genome-scale human metabolic network

artículo científico publicado en 2012

Detecting structural invariants in biological reaction networks

artículo científico publicado en 2012

Detection of elementary flux modes in biochemical networks: a promising tool for pathway analysis and metabolic engineering.

artículo científico publicado en 1999

Determination of scoring functions for protein damage susceptibility

artículo científico publicado en 2019

Discrimination between random and non-random processes in early bacterial colonization on biomaterial surfaces: application of point pattern analysis

artículo científico publicado en 2014

Dynamic optimization identifies optimal programmes for pathway regulation in prokaryotes.

artículo científico publicado en 2013

Effect of substrate competition in kinetic models of metabolic networks

artículo científico publicado en 2013

Evolutionary game theory: cells as players

artículo científico publicado en 2014

Evolutionary game theory: molecules as players

artículo científico

Exploring the pathway structure of metabolism: decomposition into subnetworks and application to Mycoplasma pneumoniae

artículo científico publicado en 2002

Fitness and stability of obligate cross-feeding interactions that emerge upon gene loss in bacteria

artículo científico publicado en 2013

Fungal alternative splicing is associated with multicellular complexity and virulence: a genome-wide multi-species study

artículo científico publicado en 2013

GC content dependency of open reading frame prediction via stop codon frequencies ⬇️

artículo científico publicado el 19 de septiembre de 2012

Hands-on metabolism analysis of complex biochemical networks using elementary flux modes

artículo científico publicado en 2011

Host-pathogen interactions between the human innate immune system and Candida albicans-understanding and modeling defense and evasion strategies

artículo científico publicado en 2015

In silico evidence for gluconeogenesis from fatty acids in humans

artículo científico publicado en 2011

Influence of Platelet-rich Plasma on the immune response of human monocyte-derived dendritic cells and macrophages stimulated with Aspergillus fumigatus

artículo científico

Inhibition of alanine aminotransferase in silico and in vivo promotes mitochondrial metabolism to impair malignant growth

artículo científico publicado en 2011

Integrated network reconstruction, visualization and analysis using YANAsquare.

artículo científico publicado en 2007

Integrative inference of gene-regulatory networks in Escherichia coli using information theoretic concepts and sequence analysis ⬇️

artículo científico publicado en 2010

Is maximization of molar yield in metabolic networks favoured by evolution?

article published in 2008

Is metabolic channelling the complicated solution to the easy problem of reducing transient times?

artículo científico publicado en 1991

Linear programming model can explain respiration of fermentation products.

artículo científico publicado en 2018

METATOOL: for studying metabolic networks.

artículo científico publicado en 1999

Mathematical analysis of enzymic reaction systems using optimization principles

artículo científico publicado en 1991

Mathematical models for explaining the Warburg effect: a review focussed on ATP and biomass production

artículo científico publicado en 2015

Metabolic adaptation and protein complexes in prokaryotes

artículo científico publicado en 2012

Metabolic costs of amino acid and protein production in Escherichia coli

artículo científico publicado en 2013

Metabolic network structure determines key aspects of functionality and regulation

artículo científico publicado en 2002

Metabolic reconstruction, constraint-based analysis and game theory to probe genome-scale metabolic networks

artículo científico publicado en 2010

Metatool 5.0: fast and flexible elementary modes analysis

artículo científico publicado en 2006

Minimization of intermediate concentrations as a suggested optimality principle for biochemical networks. II. Time hierarchy, enzymatic rate laws, and erythrocyte metabolism

artículo científico publicado en 1991

Mitochondria as an important factor in the maintenance of constant amplitudes of cytosolic calcium oscillations

artículo científico publicado en 1998

Model of tryptophan metabolism, readily scalable using tissue-specific gene expression data

artículo científico publicado en 2013

Modeling temperature entrainment of circadian clocks using the Arrhenius equation and a reconstructed model from Chlamydomonas reinhardtii

artículo científico publicado en 2012

Modeling the interrelations between the calcium oscillations and ER membrane potential oscillations

artículo científico publicado en 1997

Modelling the host-pathogen interactions of macrophages and Candida albicans using Game Theory and dynamic optimization.

artículo científico publicado en 2017

Modelling the optimal timing in metabolic pathway activation-use of Pontryagin's Maximum Principle and role of the Golden section

artículo científico publicado en 2010

Modular control analysis of slipping enzymes

artículo científico publicado en 1999

ModuleDiscoverer: Identification of regulatory modules in protein-protein interaction networks

artículo científico publicado en 2018

More than just a metabolic regulator--elucidation and validation of new targets of PdhR in Escherichia coli

artículo científico publicado en 2011

NAD+biosynthesis and salvage - a phylogenetic perspective

artículo científico publicado en 2012

Optimal regulatory strategies for metabolic pathways in Escherichia coli depending on protein costs.

artículo científico

Optimality in the zonation of ammonia detoxification in rodent liver.

artículo científico publicado en 2015

Pathway analysis of NAD+metabolism

article

Predicting novel pathways in genome-scale metabolic networks

artículo científico publicado en 2010

Predicting the physiological role of circadian metabolic regulation in the green alga Chlamydomonas reinhardtii.

artículo científico publicado en 2011

Publisher Correction: Transcriptomic alterations during ageing reflect the shift from cancer to degenerative diseases in the elderly

artículo científico publicado en 2019

Quantitative model of cell cycle arrest and cellular senescence in primary human fibroblasts

artículo científico publicado en 2012

Response to comment on 'Can sugars be produced from fatty acids? A test case for pathway analysis tools'

article

Role of sirtuins in lifespan regulation is linked to methylation of nicotinamide

artículo científico publicado en 2013

Selection of human tissue-specific elementary flux modes using gene expression data

artículo científico publicado en 2013

Special issue: Integration of OMICs datasets into Metabolic Pathway Analysis

Structural robustness of metabolic networks with respect to multiple knockouts

scientific article published on 09 October 2007

TassDB2 - A comprehensive database of subtle alternative splicing events

artículo científico publicado en 2010

TassDB: a database of alternative tandem splice sites

artículo científico publicado en 2007

The Definition of Open Reading Frame Revisited

artículo científico publicado en 2018

The definitions of metabolic control analysis revisited

artículo científico publicado el 1 de enero de 1992

The modelling of metabolic systems. Structure, control and optimality ⬇️

artículo científico publicado el 1 de junio de 1998

The tip and hidden part of the iceberg: Proteinogenic and non-proteinogenic aliphatic amino acids.

artículo científico publicado en 2016

Theoretical study of lipid biosynthesis in wild-type Escherichia coli and in a protoplast-type L-form using elementary flux mode analysis

artículo científico publicado en 2010

Time hierarchy in enzymatic reaction chains resulting from optimality principles

artículo científico publicado en 1987

Transcriptomic alterations during ageing reflect the shift from cancer to degenerative diseases in the elderly

artículo científico publicado en 2018

Understanding the roadmap of metabolism by pathway analysis

artículo científico publicado en 2007

Use of Fibonacci numbers in lipidomics - Enumerating various classes of fatty acids.

artículo científico publicado en 2017

Use of game-theoretical methods in biochemistry and biophysics

artículo científico publicado en 2008

Use of pathway analysis and genome context methods for functional genomics of Mycoplasma pneumoniae nucleotide metabolism

article

What can we learn from Einstein and Arrhenius about the optimal flow of our blood?

artículo científico publicado en 2013

YANA - a software tool for analyzing flux modes, gene-expression and enzyme activities

artículo científico publicado en 2005

Zonation of hepatic fat accumulation: insights from mathematical modelling of nutrient gradients and fatty acid uptake

artículo científico publicado en 2017

Lista de obras de Stefan Schuster

A Genome-Scale Database and Reconstruction of Caenorhabditis elegans Metabolism

A method for classifying metabolites in topological pathway analyses based on minimization of pathway number

A theoretical approach to the evolution and structural design of enzymatic networks: linear enzymatic chains, branched pathways and glycolysis of erythrocytes

Adenine and adenosine salvage pathways in erythrocytes and the role of S-adenosylhomocysteine hydrolase. A theoretical study using elementary flux modes

Against the stream: relevance of gluconeogenesis from fatty acids for natives of the arctic regions

Biochemical frequency control by synchronisation of coupled repressilators: an in silico study of modules for circadian clock systems

Calculability analysis in underdetermined metabolic networks illustrated by a model of the central metabolism in purple nonsulfur bacteria

Calculating as many fluxes as possible in underdetermined metabolic networks

Can single knockouts accurately single out gene functions?

Can sugars be produced from fatty acids? A test case for pathway analysis tools

Can sugars be produced from fatty acids? A test case for pathway analysis tools.

Can the whole be less than the sum of its parts? Pathway analysis in genome-scale metabolic networks using elementary flux patterns

Causes of upregulation of glycolysis in lymphocytes upon stimulation. A comparison with other cell types

Challenges in microbial ecology: building predictive understanding of community function and dynamics ⬇️

Combining metabolic pathway analysis with Evolutionary Game Theory: explaining the occurrence of low-yield pathways by an analytic optimization approach

Comparative Study on Alternative Splicing in Human Fungal Pathogens Suggests Its Involvement During Host Invasion

Comparison of network-based pathway analysis methods

Computing the shortest elementary flux modes in genome-scale metabolic networks

Computing the various pathways of penicillin synthesis and their molar yields

Control analysis of metabolic systems involving quasi-equilibrium reactions

Cooperation and cheating in microbial exoenzyme production--theoretical analysis for biotechnological applications

Decision-making of the benthic diatom Seminavis robusta searching for inorganic nutrients and pheromones

Defining control coefficients in non-ideal metabolic pathways

Detecting and investigating substrate cycles in a genome-scale human metabolic network

Detecting structural invariants in biological reaction networks

Detection of elementary flux modes in biochemical networks: a promising tool for pathway analysis and metabolic engineering.

Determination of scoring functions for protein damage susceptibility

Discrimination between random and non-random processes in early bacterial colonization on biomaterial surfaces: application of point pattern analysis

Dynamic optimization identifies optimal programmes for pathway regulation in prokaryotes.

Effect of substrate competition in kinetic models of metabolic networks

Evolutionary game theory: cells as players

Evolutionary game theory: molecules as players

Exploring the pathway structure of metabolism: decomposition into subnetworks and application to Mycoplasma pneumoniae

Fitness and stability of obligate cross-feeding interactions that emerge upon gene loss in bacteria

Fungal alternative splicing is associated with multicellular complexity and virulence: a genome-wide multi-species study

GC content dependency of open reading frame prediction via stop codon frequencies ⬇️

Hands-on metabolism analysis of complex biochemical networks using elementary flux modes

Host-pathogen interactions between the human innate immune system and Candida albicans-understanding and modeling defense and evasion strategies

In silico evidence for gluconeogenesis from fatty acids in humans

Influence of Platelet-rich Plasma on the immune response of human monocyte-derived dendritic cells and macrophages stimulated with Aspergillus fumigatus

Inhibition of alanine aminotransferase in silico and in vivo promotes mitochondrial metabolism to impair malignant growth

Integrated network reconstruction, visualization and analysis using YANAsquare.

Integrative inference of gene-regulatory networks in Escherichia coli using information theoretic concepts and sequence analysis ⬇️

Is maximization of molar yield in metabolic networks favoured by evolution?

Is metabolic channelling the complicated solution to the easy problem of reducing transient times?

Linear programming model can explain respiration of fermentation products.

METATOOL: for studying metabolic networks.

Mathematical analysis of enzymic reaction systems using optimization principles

Mathematical models for explaining the Warburg effect: a review focussed on ATP and biomass production

Metabolic adaptation and protein complexes in prokaryotes

Metabolic costs of amino acid and protein production in Escherichia coli

Metabolic network structure determines key aspects of functionality and regulation

Metabolic reconstruction, constraint-based analysis and game theory to probe genome-scale metabolic networks

Metatool 5.0: fast and flexible elementary modes analysis

Minimization of intermediate concentrations as a suggested optimality principle for biochemical networks. II. Time hierarchy, enzymatic rate laws, and erythrocyte metabolism

Mitochondria as an important factor in the maintenance of constant amplitudes of cytosolic calcium oscillations

Model of tryptophan metabolism, readily scalable using tissue-specific gene expression data

Modeling temperature entrainment of circadian clocks using the Arrhenius equation and a reconstructed model from Chlamydomonas reinhardtii

Modeling the interrelations between the calcium oscillations and ER membrane potential oscillations

Modelling the host-pathogen interactions of macrophages and Candida albicans using Game Theory and dynamic optimization.

Modelling the optimal timing in metabolic pathway activation-use of Pontryagin's Maximum Principle and role of the Golden section

Modular control analysis of slipping enzymes

ModuleDiscoverer: Identification of regulatory modules in protein-protein interaction networks

More than just a metabolic regulator--elucidation and validation of new targets of PdhR in Escherichia coli

NAD+biosynthesis and salvage - a phylogenetic perspective

Optimal regulatory strategies for metabolic pathways in Escherichia coli depending on protein costs.

Optimality in the zonation of ammonia detoxification in rodent liver.

Pathway analysis of NAD+metabolism

Predicting novel pathways in genome-scale metabolic networks

Predicting the physiological role of circadian metabolic regulation in the green alga Chlamydomonas reinhardtii.

Publisher Correction: Transcriptomic alterations during ageing reflect the shift from cancer to degenerative diseases in the elderly

Quantitative model of cell cycle arrest and cellular senescence in primary human fibroblasts

Response to comment on 'Can sugars be produced from fatty acids? A test case for pathway analysis tools'

Role of sirtuins in lifespan regulation is linked to methylation of nicotinamide

Selection of human tissue-specific elementary flux modes using gene expression data

Special issue: Integration of OMICs datasets into Metabolic Pathway Analysis

Structural robustness of metabolic networks with respect to multiple knockouts

TassDB2 - A comprehensive database of subtle alternative splicing events

TassDB: a database of alternative tandem splice sites