Lista de obras - Mark Achtman - Dominio Público Uruguay

A bimodal pattern of relatedness between the Salmonella Paratyphi A and Typhi genomes: convergence or divergence by homologous recombination?

artículo científico publicado en 2006

A genomic overview of the population structure of Salmonella

artículo científico publicado en 2018

A genomic portrait of the emergence, evolution, and global spread of a methicillin-resistant Staphylococcus aureus pandemic

artículo científico publicado en 2013

A multiplex single nucleotide polymorphism typing assay for detecting mutations that result in decreased fluoroquinolone susceptibility in Salmonella enterica serovars Typhi and Paratyphi A.

artículo científico publicado en 2010

A publicly accessible database for Clostridioides difficile genome sequences supports tracing of transmission chains and epidemics

artículo científico publicado en 2020

Accurate Reconstruction of Microbial Strains from Metagenomic Sequencing Using Representative Reference Genomes

Accurate reconstruction of bacterial pan- and core genomes with PEPPAN

scientific article published on 14 October 2020

CRISPR typing and subtyping for improved laboratory surveillance of Salmonella infections

artículo científico publicado en 2012

Ceftriaxone-resistant salmonella enterica serotype Newport, France.

artículo científico publicado en 2008

Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica

artículo científico publicado en 2003

Correction: CRISPR Typing and Subtyping for Improved Laboratory Surveillance of Salmonella Infections

artículo científico publicado en 2012

Correction: Multilocus Sequence Typing as a Replacement for Serotyping in Salmonella enterica

scientific article published on 21 October 2020

Distinct clones of Yersinia pestis caused the black death

artículo científico publicado en 2010

Distinct genealogies for plasmids and chromosome

artículo científico publicado en 2014

Eighteenth-century genomes show that mixed infections were common at time of peak tuberculosis in Europe

artículo científico publicado en 2015

Emergence of human-adapted Salmonella enterica is linked to the Neolithization process

scientific article published on 24 February 2020

EnteroBase: hierarchical clustering of 100 000s of bacterial genomes into species/subspecies and populations

artículo científico publicado en 2022

Epidemic multiple drug resistant Salmonella Typhimurium causing invasive disease in sub-Saharan Africa have a distinct genotype

artículo científico publicado en 2009

Evolution and population structure of Salmonella enterica serovar Newport

artículo científico publicado en 2010

Evolutionary history of Salmonella typhi

artículo científico publicado en 2006

Fate of the H-NS-repressed bgl operon in evolution of Escherichia coli

artículo científico publicado en 2009

Formal Comment to Pettengill: The Time to Most Recent Common Ancestor Does Not (Usually) Approximate the Date of Divergence.

artículo científico publicado en 2015

Frequent emergence and limited geographic dispersal of methicillin-resistant Staphylococcus aureus

artículo científico publicado en 2008

Genetic variations of live attenuated plague vaccine strains (Yersinia pestis EV76 lineage) during laboratory passages in different countries

artículo científico publicado en 2014

Genome sequence of the deep-rooted Yersinia pestis strain Angola reveals new insights into the evolution and pangenome of the plague bacterium

artículo científico publicado en 2010

Genomic analysis uncovers a phenotypically diverse but genetically homogeneous Escherichia coli ST131 clone circulating in unrelated urinary tract infections

artículo científico publicado en 2012

Genomic population structure associated with repeated escape of Salmonella enterica ATCC14028s from the laboratory into nature

artículo científico

GrapeTree: Visualization of core genomic relationships among 100,000 bacterial pathogens

scholarly article published 9 November 2017

GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens

artículo científico publicado en 2018

High-throughput genotyping of Salmonella enterica serovar Typhi allowing geographical assignment of haplotypes and pathotypes within an urban District of Jakarta, Indonesia

artículo científico publicado en 2008

High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi

artículo científico publicado en 2008

Historical variations in mutation rate in an epidemic pathogen, Yersinia pestis

artículo científico publicado en 2012

How old are bacterial pathogens?

artículo científico publicado en 2016

Identification of new epidemiological molecular markers by comparative proteomics of serogroup A meningococcal isolates from three pandemic waves

scholarly article by Giulia Bernardini et al published 4 August 2009 in Proteomics - Clinical Applications

Meningococcal genetic variation mechanisms viewed through comparative analysis of serogroup C strain FAM18.

artículo científico publicado en 2006

Metagenomics of the modern and historical human oral microbiome with phylogenetic studies on Streptococcus mutans and Streptococcus sobrinus

scientific article published on 05 October 2020

Microevolution and history of the plague bacillus, Yersinia pestis

artículo científico publicado en 2004

Millennia of genomic stability within the invasive Para C Lineage ofSalmonella enterica

article published in 2017

Mismatch induced speciation in Salmonella: model and data

artículo científico publicado en 2006

Molecular epidemiology of extraintestinal pathogenic Escherichia coli isolates from a regional cohort of elderly patients highlights the prevalence of ST131 strains with increased antimicrobial resistance in both community and hospital care settings

artículo científico publicado en 2011

Multilocus sequence typing as a replacement for serotyping in Salmonella enterica

artículo científico publicado en 2012

Multiple time scales for dispersals of bacterial disease over human history

chapter published in 2017

Neutral genomic microevolution of a recently emerged pathogen, Salmonella enterica serovar Agona

artículo científico publicado en 2013

Pan-genome Analysis of Ancient and Modern Salmonella enterica Demonstrates Genomic Stability of the Invasive Para C Lineage for Millennia

artículo científico publicado en 2018

Parallel independent evolution of pathogenicity within the genus Yersinia

artículo científico publicado en 2014

Phylogeography and molecular epidemiology of Yersinia pestis in Madagascar

artículo científico publicado en 2011

Population genetic structure of 4,12:a:- Salmonella enterica strains from harbor porpoises

artículo científico publicado en 2012

Population structure of the Yersinia pseudotuberculosis complex according to multilocus sequence typing

artículo científico publicado en 2011

Population structures in the SARA and SARB reference collections of Salmonella enterica according to MLST, MLEE and microarray hybridization.

artículo científico

Principles of Systems Biology, No. 31

scientific article published on 01 August 2018

Recombination and population structure in Salmonella enterica.

artículo científico publicado en 2011

Revival of Seeliger's historical ‘Special Listeria Culture Collection’ ⬇️

artículo científico publicado el 18 de octubre de 2011

Salmonella enterica Serotype Typhi with nonclassical quinolone resistance phenotype.

artículo científico publicado en 2011

Salmonella typhi, the causative agent of typhoid fever, is approximately 50,000 years old.

artículo científico publicado en 2002

The EnteroBase user's guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity

scientific article published on 06 December 2019

The role of China in the global spread of the current cholera pandemic.

artículo científico publicado en 2015

The ubiquitous nature of Listeria monocytogenes clones: a large-scale Multilocus Sequence Typing study

artículo científico publicado en 2013

Transforming microbial genotyping: a robotic pipeline for genotyping bacterial strains

artículo científico publicado en 2012

Transient Darwinian selection in Salmonella enterica serovar Paratyphi A during 450 years of global spread of enteric fever

artículo científico publicado en 2014

What's in a Name? Species-Wide Whole-Genome Sequencing Resolves Invasive and Noninvasive Lineages of Salmonella enterica Serotype Paratyphi B ⬇️

artículo científico publicado en 2016

Who ate whom? Adaptive Helicobacter genomic changes that accompanied a host jump from early humans to large felines

artículo científico publicado en 2006

Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity

artículo científico publicado en 2010

Lista de obras de Mark Achtman

A bimodal pattern of relatedness between the Salmonella Paratyphi A and Typhi genomes: convergence or divergence by homologous recombination?

A genomic overview of the population structure of Salmonella

A genomic portrait of the emergence, evolution, and global spread of a methicillin-resistant Staphylococcus aureus pandemic

A multiplex single nucleotide polymorphism typing assay for detecting mutations that result in decreased fluoroquinolone susceptibility in Salmonella enterica serovars Typhi and Paratyphi A.

A publicly accessible database for Clostridioides difficile genome sequences supports tracing of transmission chains and epidemics

Accurate Reconstruction of Microbial Strains from Metagenomic Sequencing Using Representative Reference Genomes

Accurate reconstruction of bacterial pan- and core genomes with PEPPAN

CRISPR typing and subtyping for improved laboratory surveillance of Salmonella infections

Ceftriaxone-resistant salmonella enterica serotype Newport, France.

Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica

Correction: CRISPR Typing and Subtyping for Improved Laboratory Surveillance of Salmonella Infections

Correction: Multilocus Sequence Typing as a Replacement for Serotyping in Salmonella enterica

Distinct clones of Yersinia pestis caused the black death

Distinct genealogies for plasmids and chromosome

Eighteenth-century genomes show that mixed infections were common at time of peak tuberculosis in Europe

Emergence of human-adapted Salmonella enterica is linked to the Neolithization process

EnteroBase: hierarchical clustering of 100 000s of bacterial genomes into species/subspecies and populations

Epidemic multiple drug resistant Salmonella Typhimurium causing invasive disease in sub-Saharan Africa have a distinct genotype

Evolution and population structure of Salmonella enterica serovar Newport

Evolutionary history of Salmonella typhi

Fate of the H-NS-repressed bgl operon in evolution of Escherichia coli

Formal Comment to Pettengill: The Time to Most Recent Common Ancestor Does Not (Usually) Approximate the Date of Divergence.

Frequent emergence and limited geographic dispersal of methicillin-resistant Staphylococcus aureus

Genetic variations of live attenuated plague vaccine strains (Yersinia pestis EV76 lineage) during laboratory passages in different countries

Genome sequence of the deep-rooted Yersinia pestis strain Angola reveals new insights into the evolution and pangenome of the plague bacterium

Genomic analysis uncovers a phenotypically diverse but genetically homogeneous Escherichia coli ST131 clone circulating in unrelated urinary tract infections

Genomic population structure associated with repeated escape of Salmonella enterica ATCC14028s from the laboratory into nature

GrapeTree: Visualization of core genomic relationships among 100,000 bacterial pathogens

GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens

High-throughput genotyping of Salmonella enterica serovar Typhi allowing geographical assignment of haplotypes and pathotypes within an urban District of Jakarta, Indonesia

High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi

Historical variations in mutation rate in an epidemic pathogen, Yersinia pestis

How old are bacterial pathogens?

Identification of new epidemiological molecular markers by comparative proteomics of serogroup A meningococcal isolates from three pandemic waves

Meningococcal genetic variation mechanisms viewed through comparative analysis of serogroup C strain FAM18.

Metagenomics of the modern and historical human oral microbiome with phylogenetic studies on Streptococcus mutans and Streptococcus sobrinus

Microevolution and history of the plague bacillus, Yersinia pestis

Millennia of genomic stability within the invasive Para C Lineage ofSalmonella enterica

Mismatch induced speciation in Salmonella: model and data

Molecular epidemiology of extraintestinal pathogenic Escherichia coli isolates from a regional cohort of elderly patients highlights the prevalence of ST131 strains with increased antimicrobial resistance in both community and hospital care settings

Multilocus sequence typing as a replacement for serotyping in Salmonella enterica

Multiple time scales for dispersals of bacterial disease over human history

Neutral genomic microevolution of a recently emerged pathogen, Salmonella enterica serovar Agona

Pan-genome Analysis of Ancient and Modern Salmonella enterica Demonstrates Genomic Stability of the Invasive Para C Lineage for Millennia

Parallel independent evolution of pathogenicity within the genus Yersinia

Phylogeography and molecular epidemiology of Yersinia pestis in Madagascar

Population genetic structure of 4,12:a:- Salmonella enterica strains from harbor porpoises

Population structure of the Yersinia pseudotuberculosis complex according to multilocus sequence typing

Population structures in the SARA and SARB reference collections of Salmonella enterica according to MLST, MLEE and microarray hybridization.

Principles of Systems Biology, No. 31

Recombination and population structure in Salmonella enterica.

Revival of Seeliger's historical ‘Special Listeria Culture Collection’ ⬇️

Salmonella enterica Serotype Typhi with nonclassical quinolone resistance phenotype.

Salmonella typhi, the causative agent of typhoid fever, is approximately 50,000 years old.

The EnteroBase user's guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity

The role of China in the global spread of the current cholera pandemic.

The ubiquitous nature of Listeria monocytogenes clones: a large-scale Multilocus Sequence Typing study

Transforming microbial genotyping: a robotic pipeline for genotyping bacterial strains

Transient Darwinian selection in Salmonella enterica serovar Paratyphi A during 450 years of global spread of enteric fever

What's in a Name? Species-Wide Whole-Genome Sequencing Resolves Invasive and Noninvasive Lineages of Salmonella enterica Serotype Paratyphi B ⬇️

Who ate whom? Adaptive Helicobacter genomic changes that accompanied a host jump from early humans to large felines

Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity