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Lista de obras de Andrew I. Su

A Comparison of the Celera and Ensembl Predicted Gene Sets Reveals Little Overlap in Novel Genes

article

A Large-scale Drug Repositioning Survey for SARS-CoV-2 Antivirals

artículo científico publicado en 2020

A common and unstable copy number variant is associated with differences in Glo1 expression and anxiety-like behavior

artículo científico publicado en 2009

A comprehensive and scalable database search system for metaproteomics

artículo científico publicado en 2016

A comprehensive and scalable database search system for metaproteomics

A crowdsourcing workflow for extracting chemical-induced disease relations from free text

artículo científico publicado en 2016

A gene atlas of the mouse and human protein-encoding transcriptomes

artículo científico publicado en 2004

A gene expression atlas of the domestic pig

artículo científico publicado en 2012

A gene wiki for community annotation of gene function

artículo científico publicado en 2008

A genome-wide RNAi screen for modifiers of the circadian clock in human cells

artículo científico publicado en 2009

A genome-wide survey of mutations in the Jurkat cell line.

artículo científico publicado en 2018

A novel approach to investigate tissue-specific trinucleotide repeat instability

artículo científico publicado en 2010

A practical review of gastrointestinal manifestations in Parkinson's disease

artículo científico publicado en 2017

A protocol for adding knowledge to Wikidata, a case report

scientific article published on 07 April 2020

A protocol for adding knowledge to Wikidata: aligning resources on human coronaviruses ⬇️

artículo científico publicado en 2021

A task-based approach for Gene Ontology evaluation

artículo científico publicado en 2013

Academics can help shape Wikipedia ⬇️

artículo científico publicado en 2017

Advancing computational biology and bioinformatics research through open innovation competitions

artículo científico publicado en 2019

Aligning Needs: Integrating Citizen Science Efforts into Schools Through Service Requirements

scientific article published on 01 January 2019

Aligning interests: Integrating Citizen Science Efforts into Schools Through Service Requirements

An efficient rapid system for profiling the cellular activities of molecular libraries.

artículo científico publicado en 2006

Analysis of gene expression identifies candidate markers and pharmacological targets in prostate cancer

artículo científico publicado en 2001

Applications of a rat multiple tissue gene expression data set.

artículo científico publicado en 2004

Applying Citizen Science to Gene, Drug, Disease Relationship Extraction from Biomedical Abstracts

bioRxiv article

Applying citizen science to gene, drug and disease relationship extraction from biomedical abstracts

scientific article published on 01 February 2020

Association study of long-term kidney transplant rejection using whole-exome sequencing

Author Correction: A protocol for adding knowledge to Wikidata: aligning resources on human coronaviruses

artículo científico publicado en 2023

Author response: Wikidata as a knowledge graph for the life sciences

scholarly article, peer review and author response published on 24 January 2020

BioGPS and GXD: mouse gene expression data-the benefits and challenges of data integration

artículo científico publicado en 2012

BioGPS and MyGene.info: organizing online, gene-centric information

artículo científico publicado en 2013

BioGPS: an extensible and customizable portal for querying and organizing gene annotation resources

artículo científico publicado en 2009

BioGPS: building your own mash-up of gene annotations and expression profiles

artículo científico publicado en 2015

BioThings Explorer: a query engine for a federated knowledge graph of biomedical APIs

artículo científico publicado en 2023

Branch: an interactive, web-based tool for testing hypotheses and developing predictive models

artículo científico publicado en 2016

Building a biomedical semantic network in Wikipedia with Semantic Wiki Links

artículo científico publicado en 2012

CAFET algorithm reveals Wnt/PCP signature in lung squamous cell carcinoma

artículo científico publicado en 2011

CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer

artículo científico publicado en 2017

CIViC: A knowledgebase for expert-crowdsourcing the clinical interpretation of variants in cancer

ChlamBase: a curated model organism database for the Chlamydia research community.

artículo científico publicado en 2019

Citizen Science for Mining the Biomedical Literature

artículo científico publicado en 2016

Citizen Science for Mining the Biomedical Literature

Clock gene wikis available: join the "long tail"

article

Combining machine learning, crowdsourcing and expert knowledge to detect chemical-induced diseases in text

artículo científico publicado en 2016

Common PIEZO1 Allele in African Populations Causes RBC Dehydration and Attenuates Plasmodium Infection

artículo científico publicado en 2018

Comparative analysis of haplotype association mapping algorithms

artículo científico publicado en 2006

Coordinated transcription of key pathways in the mouse by the circadian clock

artículo científico publicado en 2002

Correcting the F508del-CFTR variant by modulating eukaryotic translation initiation factor 3-mediated translation initiation

artículo científico publicado en 2018

Correction: Dizeez: An Online Game for Human Gene-Disease Annotation

artículo científico publicado en 2013

Corrigendum to “Using single cell analysis for translational studies in immune mediated diseases: Opportunities and challenges” [Mol. Immunol. 103 (2018) 191–199]

artículo científico publicado en 2019

Cross-linking BioThings APIs through JSON-LD to facilitate knowledge exploration

artículo científico publicado en 2018

Crowdsourcing and mining crowd data

artículo científico publicado en 2015

Crowdsourcing for bioinformatics

artículo científico publicado en 2013

Crowdsourcing in biomedicine: challenges and opportunities

artículo científico publicado en 2016

Data-Driven Approach To Determine Popular Proteins for Targeted Proteomics Translation of Six Organ Systems

artículo científico publicado en 2016

Deep sequencing of the murine IgH repertoire reveals complex regulation of nonrandom V gene rearrangement frequencies

artículo científico publicado en 2013

Design and application of a knowledge network for automatic prioritization of drug mechanisms

artículo científico publicado en 2022

Destabilization of Ca2+-free gelsolin may not be responsible for proteolysis in Familial Amyloidosis of Finnish Type

artículo científico publicado en 2001

Discovery of SARS-CoV-2 antiviral drugs through large-scale compound repurposing

scientific article published on 24 July 2020

Dizeez: an online game for human gene-disease annotation

artículo científico publicado en 2013

Docking molecules by families to increase the diversity of hits in database screens: computational strategy and experimental evaluation

artículo científico publicado en 2001

DrugMechDB: A Curated Database of Drug Mechanisms

artículo científico publicado en 2023

Dysregulated circadian rhythm pathway in human osteoarthritis: NR1D1 and BMAL1 suppression alters TGF-β signaling in chondrocytes.

artículo científico publicado en 2016

EXPLANe: An Extensible Framework for Poster Annotation with Mobile Devices

Endoscopic Therapies for Gastroparesis

artículo científico publicado en 2018

Exploring applications of crowdsourcing to cryo-EM.

artículo científico publicado en 2018

Expression analysis of G Protein-Coupled Receptors in mouse macrophages

artículo científico publicado en 2008

Extending gene ontology in the context of extracellular RNA and vesicle communication

artículo científico publicado en 2016

FoxO transcription factors modulate autophagy and proteoglycan 4 in cartilage homeostasis and osteoarthritis.

artículo científico publicado en 2018

Functional Annotation of the Transcriptome of the Pig, Sus scrofa, Based Upon Network Analysis of an RNAseq Transcriptional Atlas

artículo científico publicado en 2019

Functional expression of dental plaque microbiota.

artículo científico publicado en 2014

Games with a scientific purpose ⬇️

artículo científico publicado el 28 de diciembre de 2011

Gene Expression Evolves Faster in Narrowly Than in Broadly Expressed Mammalian Genes

article

Gene Expression in Biopsies of Acute Rejection and Interstitial Fibrosis/Tubular Atrophy Reveals Highly Shared Mechanisms That Correlate With Worse Long-Term Outcomes.

artículo científico publicado en 2016

Gene Profiling and T Cell Receptor Sequencing from Antigen-Specific CD4 T Cells

artículo científico publicado en 2018

Gene Wiki Reviews: marrying crowdsourcing with traditional peer review

artículo científico publicado en 2013

Gene Wiki Reviews—Raising the quality and accessibility of information about the human genome

artículo científico publicado en 2016

Gene expression during the priming phase of liver regeneration after partial hepatectomy in mice

artículo científico publicado en 2002

Gene expression profile of murine long-term reconstituting vs. short-term reconstituting hematopoietic stem cells

artículo científico publicado en 2005

Gene set enrichment in eQTL data identifies novel annotations and pathway regulators

artículo científico publicado en 2008

Genetical genomics: spotlight on QTL hotspots

artículo científico publicado en 2008

Genome-Wide Analysis of CREB Target Genes Reveals A Core Promoter Requirement for cAMP Responsiveness

article

Genome-wide analysis of CREB target genes reveals a core promoter requirement for cAMP responsiveness

artículo científico publicado en 2003

Genome-wide haplotype association mapping in mice identifies a genetic variant in CER1 associated with BMD and fracture in southern Chinese women

artículo científico publicado en 2009

Genomewide association analysis in diverse inbred mice: power and population structure

artículo científico publicado en 2007

Genomic effects of polyamide/DNA interactions on mRNA expression

artículo científico publicado en 2002

Harnessing the heart of big data

artículo científico publicado en 2015

HierS: hierarchical scaffold clustering using topological chemical graphs

artículo científico publicado en 2005

High-performance web services for querying gene and variant annotation

artículo científico publicado en 2016

IBS Bowel Habits and Associated Symptoms: Forming a Clearer Picture ⬇️

artículo científico publicado el 19 de noviembre de 2012

Identification of Serum-Derived Sphingosine-1-Phosphate as a Small Molecule Regulator of YAP

Identification of regulatory elements that control PPARγ expression in adipocyte progenitors

artículo científico publicado en 2013

Identification of transcription factors responsible for dysregulated networks in human osteoarthritis cartilage by global gene expression analysis

article

Increased DNA Methylation and Reduced Expression of Transcription Factors in Human Osteoarthritis Cartilage

artículo científico publicado en 2016

Integration of extracellular RNA profiling data using metadata, biomedical ontologies and Linked Data technologies

artículo científico publicado en 2015

Integrative analysis of low- and high-resolution eQTL

artículo científico publicado en 2010

Knowledge.Bio: A Web application for exploring, building and sharing webs of biomedical relationships mined from PubMed

Large scale molecular analysis identifies genes with altered expression in salivary adenoid cystic carcinoma

artículo científico publicado en 2002

Large-scale analysis of the human and mouse transcriptomes

artículo científico publicado en 2002

Large-scale profiling of Rab GTPase trafficking networks: the membrome

artículo científico publicado en 2005

Linking genes to diseases with a SNPedia-Gene Wiki mashup

artículo científico publicado en 2012

Metaproteomics of colonic microbiota unveils discrete protein functions among colitic mice and control groups

artículo científico publicado en 2018

Metaproteomics of colonic microbiota unveils discrete protein functions among colitic mice and control groups

Microtask crowdsourcing for disease mention annotation in PubMed abstracts

artículo científico publicado en 2015

Mining the Gene Wiki for functional genomic knowledge

artículo científico

Mohawk is a transcription factor that promotes meniscus cell phenotype and tissue repair and reduces osteoarthritis severity

artículo científico publicado en 2020

Molecular classification of human carcinomas by use of gene expression signatures.

artículo científico publicado en 2001

Multi-Omics Database Analysis of Aminoacyl-tRNA Synthetases in Cancer

scientific article published on 22 November 2020

MyGene.info and MyVariant.info: Gene and Variant Annotation Query Services

article

MyGene.info: gene annotation query as a service

article

Nonlinear partial differential equations and applications: Genomic analysis of the host response to hepatitis C virus infection

artículo científico publicado en 2002

Omics Pipe: A Computational Framework for Reproducible Multi-Omics Data Analysis

Omics Pipe: a community-based framework for reproducible multi-omics data analysis

artículo científico publicado en 2015

OncoRep: An n-of-1 reporting tool to support genome-guided treatment for breast cancer patients using RNA-sequencing

OncoRep: an n-of-1 reporting tool to support genome-guided treatment for breast cancer patients using RNA-sequencing

artículo científico publicado en 2015

Organizing knowledge to enable personalization of medicine in cancer

artículo científico publicado en 2014

Oxidative stress diverts tRNA synthetase to nucleus for protection against DNA damage

artículo científico publicado en 2014

Perspectives on tracking data reuse across biodata resources

Phenotypic characterization of a genetically diverse panel of mice for behavioral despair and anxiety

artículo científico publicado en 2010

Position β57 of I-Ag7 controls early anti-insulin responses in NOD mice, linking an MHC susceptibility allele to type 1 diabetes onset

scientific article published on 01 August 2019

Power-law-like distributions in biomedical publications and research funding

artículo científico publicado en 2007

Prioritizing Proteomics Assay Development for Clinical Translation

article

Progress toward a universal biomedical data translator

publication published in 2022

Quantitative Metaproteomics and Activity-Based Probe Enrichment Reveals Significant Alterations in Protein Expression from a Mouse Model of Inflammatory Bowel Disease

artículo científico publicado en 2017

Reply to “Normalization procedures and detection of linkage signal in genetical-genomics experiments”

Right Flank Pain Caused by a Sigmoid Colon Mass

scientific article published on 05 April 2019

Science Game Lab: tool for the unification of biomedical games with a purpose

Screening the mammalian extracellular proteome for regulators of embryonic human stem cell pluripotency

artículo científico publicado en 2010

SpaCell: integrating tissue morphology and spatial gene expression to predict disease cells

scientific article published on 01 April 2020

Stress-independent activation of XBP1s and/or ATF6 reveals three functionally diverse ER proteostasis environments

artículo científico publicado en 2013

Structured Reviews for Data and Knowledge Driven Research

Structured reviews for data and knowledge-driven research

artículo científico publicado en 2020

Suppression of REDD1 in osteoarthritis cartilage, a novel mechanism for dysregulated mTOR signaling and defective autophagy

artículo científico publicado en 2016

Synthesis and biological evaluation of myoseverin derivatives: microtubule assembly inhibitors.

artículo científico

TCLUST: a fast method for clustering genome-scale expression data

artículo científico publicado en 2011

Ten simple rules for cultivating open science and collaborative R&D;

artículo científico publicado en 2013

The Gene Wiki in 2011: community intelligence applied to human gene annotation

artículo científico publicado en 2012

The Gene Wiki: community intelligence applied to human gene annotation

artículo científico publicado en 2010

The Healthy Pregnancy Research Program: Transforming Pregnancy Research Through a ResearchKit App

article published in 2018

The Healthy Pregnancy Research Program: transforming pregnancy research through a ResearchKit app

scientific article published on 05 September 2018

The Implicitome: A Resource for Rationalizing Gene-Disease Associations

artículo científico publicado en 2016

The ReFRAME library as a comprehensive drug repurposing library and its application to the treatment of cryptosporidiosis

article published in the Proceedings of the National Academy of Sciences of the United States of America

The cure: design and evaluation of a crowdsourcing game for gene selection for breast cancer survival prediction

artículo científico publicado en 2014

The evolution of dynamin to regulate clathrin-mediated endocytosis: speculations on the evolutionarily late appearance of dynamin relative to clathrin-mediated endocytosis

artículo científico publicado en 2012

The influence of cholesterol and lipid metabolism on host cell structure and hepatitis C virus replication

artículo científico publicado en 2006

The nicotinic α6 subunit gene determines variability in chronic pain sensitivity via cross-inhibition of P2X2/3 receptors

artículo científico publicado en 2015

Time-resolved evaluation of compound repositioning predictions on a text-mined knowledge network

artículo científico publicado en 2019

Transcriptional profiling of the effects of 25-hydroxycholesterol on human hepatocyte metabolism and the antiviral state it conveys against the hepatitis C virus

artículo científico publicado en 2009

Triflic Acid Treatment Enables LC-MS/MS Analysis of Insoluble Bacterial Biomass

artículo científico publicado en 2018

Triflic acid treatment enables LC-MS/MS analysis of insoluble bacterial biomass

Uncovering regulatory pathways that affect hematopoietic stem cell function using 'genetical genomics'.

artículo científico publicado en 2005

Unifying model for molecular determinants of the preselection Vβ repertoire

artículo científico publicado en 2013

Use of a dense single nucleotide polymorphism map for in silico mapping in the mouse

artículo científico publicado en 2004

Using single cell analysis for translational studies in immune mediated diseases: Opportunities and challenges

artículo científico publicado en 2018

Utility of high-resolution anorectal manometry and wireless motility capsule in the evaluation of patients with Parkinson's disease and chronic constipation

artículo científico publicado en 2016

Utility of the wireless motility capsule and lactulose breath testing in the evaluation of patients with Parkinson's disease who present with functional gastrointestinal symptoms

artículo científico publicado en 2017

Visual Artificial Tongue for Quantitative Metal-Cation Analysis by an Off-the-Shelf Dye Array

article

Wikidata as a FAIR knowledge graph for the life sciences

scholarly article posted as a preprint in BioRxiv on 11 February 2020

Wikidata as a knowledge graph for the life sciences ⬇️

artículo científico publicado en 2020

Wikidata as a semantic framework for the Gene Wiki initiative

bioRxiv preprint

YY1 plays an essential role at all stages of B-cell differentiation

artículo científico publicado en 2016

Zone-specific gene expression patterns in articular cartilage

artículo científico publicado en 2013

exRNA Atlas Analysis Reveals Distinct Extracellular RNA Cargo Types and Their Carriers Present across Human Biofluids

scientific article published on 01 April 2019

genegames.org: High-Throughput Access to Biological Knowledge and Reasoning through Online Games

Centralizing content and distributing labor: a community model for curating the very long tail of microbial genomes

artículo científico publicado en 2015

ChlamBase: a curated model organism database for the Chlamydia research community

artículo científico publicado en 2019

Linking Wikidata to the Rest of the Semantic Web ⬇️

scientific article (publication date: 19 February 2017)

Opportunities and challenges presented by Wikidata in the context of biocuration ⬇️

artículo científico publicado en 2016

WikiGenomes: an open Web application for community consumption and curation of gene annotation data in Wikidata ⬇️

artículo científico publicado en 2017

Wikidata as a linked-data hub for Biodiversity data

artículo científico publicado en 2019

Wikidata as a semantic framework for the gene wiki initiative ⬇️

artículo científico publicado en 2016

Wikidata as an intuitive resource towards semantic data modeling in data FAIRification ⬇️

scholarly article by Annika Jacobsen published in December 2018

Wikidata: A platform for data integration and dissemination for the life sciences and beyond ⬇️

artículo científico publicado en 2015

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