Lista de obras - Julian Gough - Dominio Público Uruguay

A Subset of Ubiquitin-Conjugating Enzymes Is Essential for Plant Immunity

artículo científico publicado en 2016

A comparison of profile hidden Markov model procedures for remote homology detection

artículo científico publicado en 2002

A database of bacterial lipoproteins (DOLOP) with functional assignments to predicted lipoproteins

artículo científico publicado en 2006

A disease-drug-phenotype matrix inferred by walking on a functional domain network ⬇️

artículo científico publicado el 5 de marzo de 2013

A domain-centric solution to functional genomics via dcGO Predictor

artículo científico publicado en 2013

A large-scale evaluation of computational protein function prediction

artículo científico publicado en 2013

A managerial model of investment: overlooked alternatives

A phylogenomic profile of globins

artículo científico publicado en 2006

A predictive computational framework for direct reprogramming between human cell types

artículo científico publicado en 2016

A promoter-level mammalian expression atlas

artículo científico publicado en 2014

An Atlas of Combinatorial Transcriptional Regulation in Mouse and Man

An atlas of combinatorial transcriptional regulation in mouse and man

artículo científico publicado en 2010

An atlas of human long non-coding RNAs with accurate 5' ends.

artículo científico publicado en 2017

An expanded evaluation of protein function prediction methods shows an improvement in accuracy ⬇️

artículo científico publicado en 2016

An integrative approach to predicting the functional effects of non-coding and coding sequence variation

artículo científico publicado en 2015

Are viruses a source of new protein folds for organisms? - Virosphere structure space and evolution

artículo científico publicado en 2011

CAGI SickKids challenges: Assessment of phenotype and variant predictions derived from clinical and genomic data of children with undiagnosed diseases

scientific article published on 03 September 2019

Classification of intrinsically disordered regions and proteins

artículo científico publicado en 2014

Classification, expression pattern, and E3 ligase activity assay of rice U-box-containing proteins

artículo científico publicado en 2008

Comparison of the small molecule metabolic enzymes of Escherichia coli and Saccharomyces cerevisiae

artículo científico publicado en 2002

Computational methods for direct cell conversion

artículo científico publicado en 2016

Convergent evolution of domain architectures (is rare).

artículo científico publicado en 2004

DGEclust: differential expression analysis of clustered count data ⬇️

artículo científico publicado en 2015

DcGO: database of domain-centric ontologies on functions, phenotypes, diseases and more

artículo científico publicado en 2012

Development and evaluation of an automated annotation pipeline and cDNA annotation system

artículo científico publicado en 2003

Did Viruses Evolve As a Distinct Supergroup from Common Ancestors of Cells?

artículo científico publicado en 2016

Distinguishing protein-coding from non-coding RNAs through support vector machines

artículo científico publicado en 2006

D²P²: database of disordered protein predictions

artículo científico publicado en 2012

Evolution of eukaryotic genome architecture: Insights from the study of a rapidly evolving metazoan, Oikopleura dioica: Non-adaptive forces such as elevated mutation rates may influence the evolution of genome architecture

artículo científico publicado en 2011

Evolution of the Calcium-Based Intracellular Signaling System

artículo científico publicado en 2016

Evolution of the protein repertoire

artículo científico publicado en 2003

Evolutionarily consistent families in SCOP: sequence, structure and function ⬇️

artículo científico publicado el 18 de octubre de 2012

Expression and in silico structural analysis of a rice (Oryza sativa) hemoglobin 5.

artículo científico publicado en 2008

Function-selective domain architecture plasticity potentials in eukaryotic genome evolution

artículo científico publicado en 2015

Functional map and domain structure of MET, the product of the c- met protooncogene and receptor for hepatocyte growth factor/scatter factor ⬇️

artículo científico publicado el 3 de octubre de 2003

Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains

artículo científico publicado en 2013

Genome3D: exploiting structure to help users understand their sequences

artículo científico publicado en 2015

Genomic and structural aspects of protein evolution

artículo científico publicado en 2009

Genomic scale sub-family assignment of protein domains

artículo científico publicado en 2006

Hologenome analysis of two marine sponges with different microbiomes

artículo científico publicado en 2016

Improving protein secondary structure prediction using a simple k-mer model

artículo científico publicado en 2010

InterPro in 2011: new developments in the family and domain prediction database

artículo científico publicado en 2012

InterPro in 2011: new developments in the family and domain prediction database

artículo científico publicado en 2012

InterPro in 2017-beyond protein family and domain annotations

artículo científico publicado en 2016

InterPro in 2019: improving coverage, classification and access to protein sequence annotations

article by Alex Mitchell et al published 6 November 2018 in Nucleic Acids Research

InterPro, progress and status in 2005

artículo científico publicado en 2005

InterPro: the integrative protein signature database

artículo científico publicado en 2009

Matching phenotypes to whole genomes: Lessons learned from four iterations of the personal genome project community challenges.

artículo científico publicado en 2017

Molecular Principles of Gene Fusion Mediated Rewiring of Protein Interaction Networks in Cancer

artículo científico publicado en 2016

Mouse proteome analysis

artículo científico publicado en 2003

New developments in the InterPro database

artículo científico publicado en 2007

Performance of in silico tools for the evaluation of p16INK4a (CDKN2A) variants in CAGI.

artículo científico publicado en 2017

Predicting the functional consequences of cancer-associated amino acid substitutions

artículo científico publicado en 2013

Predicting the functional, molecular, and phenotypic consequences of amino acid substitutions using hidden Markov models

artículo científico publicado en 2012

Proteins with class alpha/beta fold have high-level participation in fusion events

artículo científico publicado en 2002

Ranking non-synonymous single nucleotide polymorphisms based on disease concepts

artículo científico publicado en 2014

SUPERFAMILY 1.75 including a domain-centric gene ontology method

artículo científico publicado en 2010

SUPERFAMILY--sophisticated comparative genomics, data mining, visualization and phylogeny

artículo científico publicado en 2009

SUPERFAMILY: HMMs representing all proteins of known structure. SCOP sequence searches, alignments and genome assignments ⬇️

artículo científico publicado el 1 de enero de 2002

Sequences and topology: disorder, modularity, and post/pre translation modification ⬇️

artículo científico publicado el 28 de mayo de 2013

Structured and disordered facets of the GPCR fold

artículo científico publicado en 2014

Supra-domains: evolutionary units larger than single protein domains

artículo científico publicado en 2004

The InterPro protein families database: the classification resource after 15 years

artículo científico publicado en 2015

The SUPERFAMILY 1.75 database in 2014: a doubling of data

artículo científico publicado en 2014

The SUPERFAMILY 2.0 database: a significant proteome update and a new webserver.

artículo científico publicado en 2019

The SUPERFAMILY database in 2004: additions and improvements

artículo científico publicado en 2004

The SUPERFAMILY database in 2007: families and functions

artículo científico publicado en 2006

The SUPERFAMILY database in structural genomics

artículo científico publicado en 2002

The `dnet’ approach promotes emerging research on cancer patient survival

artículo científico publicado en 2014

The evolution and structure prediction of coiled coils across all genomes

artículo científico publicado en 2010

The evolution of human cells in terms of protein innovation

artículo científico publicado en 2014

The evolutionary dynamics of protein networks.

artículo científico publicado en 2010

The linked conservation of structure and function in a family of high diversity: the monomeric cupredoxins

artículo científico publicado en 2004

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.

artículo científico publicado en 2009

Three globin lineages belonging to two structural classes in genomes from the three kingdoms of life

artículo científico publicado en 2005

Three reasons protein disorder analysis makes more sense in the light of collagen.

artículo científico publicado en 2016

Transcript annotation in FANTOM3: mouse gene catalog based on physical cDNAs

artículo científico publicado en 2006

TreeVector: scalable, interactive, phylogenetic trees for the web

artículo científico publicado en 2010

Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals

artículo científico publicado en 2016

supraHex: an R/Bioconductor package for tabular omics data analysis using a supra-hexagonal map.

artículo científico publicado en 2013

Lista de obras de Julian Gough

A Subset of Ubiquitin-Conjugating Enzymes Is Essential for Plant Immunity

A comparison of profile hidden Markov model procedures for remote homology detection

A database of bacterial lipoproteins (DOLOP) with functional assignments to predicted lipoproteins

A disease-drug-phenotype matrix inferred by walking on a functional domain network ⬇️

A domain-centric solution to functional genomics via dcGO Predictor

A large-scale evaluation of computational protein function prediction

A managerial model of investment: overlooked alternatives

A phylogenomic profile of globins

A predictive computational framework for direct reprogramming between human cell types

A promoter-level mammalian expression atlas

An Atlas of Combinatorial Transcriptional Regulation in Mouse and Man

An atlas of combinatorial transcriptional regulation in mouse and man

An atlas of human long non-coding RNAs with accurate 5' ends.

An expanded evaluation of protein function prediction methods shows an improvement in accuracy ⬇️

An integrative approach to predicting the functional effects of non-coding and coding sequence variation

Are viruses a source of new protein folds for organisms? - Virosphere structure space and evolution

CAGI SickKids challenges: Assessment of phenotype and variant predictions derived from clinical and genomic data of children with undiagnosed diseases

Classification of intrinsically disordered regions and proteins

Classification, expression pattern, and E3 ligase activity assay of rice U-box-containing proteins

Comparison of the small molecule metabolic enzymes of Escherichia coli and Saccharomyces cerevisiae

Computational methods for direct cell conversion

Convergent evolution of domain architectures (is rare).

DGEclust: differential expression analysis of clustered count data ⬇️

DcGO: database of domain-centric ontologies on functions, phenotypes, diseases and more

Development and evaluation of an automated annotation pipeline and cDNA annotation system

Did Viruses Evolve As a Distinct Supergroup from Common Ancestors of Cells?

Distinguishing protein-coding from non-coding RNAs through support vector machines

D²P²: database of disordered protein predictions

Evolution of eukaryotic genome architecture: Insights from the study of a rapidly evolving metazoan, Oikopleura dioica: Non-adaptive forces such as elevated mutation rates may influence the evolution of genome architecture

Evolution of the Calcium-Based Intracellular Signaling System

Evolution of the protein repertoire

Evolutionarily consistent families in SCOP: sequence, structure and function ⬇️

Expression and in silico structural analysis of a rice (Oryza sativa) hemoglobin 5.

Function-selective domain architecture plasticity potentials in eukaryotic genome evolution

Functional map and domain structure of MET, the product of the c- met protooncogene and receptor for hepatocyte growth factor/scatter factor ⬇️

Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains

Genome3D: exploiting structure to help users understand their sequences

Genomic and structural aspects of protein evolution

Genomic scale sub-family assignment of protein domains

Hologenome analysis of two marine sponges with different microbiomes

Improving protein secondary structure prediction using a simple k-mer model

InterPro in 2011: new developments in the family and domain prediction database

InterPro in 2011: new developments in the family and domain prediction database

InterPro in 2017-beyond protein family and domain annotations

InterPro in 2019: improving coverage, classification and access to protein sequence annotations

InterPro, progress and status in 2005

InterPro: the integrative protein signature database

Matching phenotypes to whole genomes: Lessons learned from four iterations of the personal genome project community challenges.

Molecular Principles of Gene Fusion Mediated Rewiring of Protein Interaction Networks in Cancer

Mouse proteome analysis

New developments in the InterPro database

Performance of in silico tools for the evaluation of p16INK4a (CDKN2A) variants in CAGI.

Predicting the functional consequences of cancer-associated amino acid substitutions

Predicting the functional, molecular, and phenotypic consequences of amino acid substitutions using hidden Markov models

Proteins with class alpha/beta fold have high-level participation in fusion events

Ranking non-synonymous single nucleotide polymorphisms based on disease concepts

SUPERFAMILY 1.75 including a domain-centric gene ontology method

SUPERFAMILY--sophisticated comparative genomics, data mining, visualization and phylogeny

SUPERFAMILY: HMMs representing all proteins of known structure. SCOP sequence searches, alignments and genome assignments ⬇️

Sequences and topology: disorder, modularity, and post/pre translation modification ⬇️

Structured and disordered facets of the GPCR fold

Supra-domains: evolutionary units larger than single protein domains

The InterPro protein families database: the classification resource after 15 years

The SUPERFAMILY 1.75 database in 2014: a doubling of data

The SUPERFAMILY 2.0 database: a significant proteome update and a new webserver.

The SUPERFAMILY database in 2004: additions and improvements

The SUPERFAMILY database in 2007: families and functions

The SUPERFAMILY database in structural genomics

The `dnet’ approach promotes emerging research on cancer patient survival

The evolution and structure prediction of coiled coils across all genomes

The evolution of human cells in terms of protein innovation

The evolutionary dynamics of protein networks.

The linked conservation of structure and function in a family of high diversity: the monomeric cupredoxins

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.

Three globin lineages belonging to two structural classes in genomes from the three kingdoms of life

Three reasons protein disorder analysis makes more sense in the light of collagen.

Transcript annotation in FANTOM3: mouse gene catalog based on physical cDNAs

TreeVector: scalable, interactive, phylogenetic trees for the web

Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals