Lista de obras - Jennifer Gardy - Dominio Público Uruguay

A brief primer on genomic epidemiology: lessons learned from Mycobacterium tuberculosis.

artículo científico publicado en 2016

A metagenomic approach to investigate the microbial causes of myalgic encephalomyelitis/chronic fatigue syndrome: moving beyond XMRV.

artículo científico publicado en 2013

A microbiological revolution meets an ancient disease: improving the management of tuberculosis with genomics

artículo científico publicado en 2015

A sentinel platform to evaluate influenza vaccine effectiveness and new variant circulation, Canada 2010-2011 season

artículo científico publicado en 2012

A systematic method for surveying data visualizations and a resulting genomic epidemiology visualization typology: GEViT

scholarly article published 22 May 2018

A systematic method for surveying data visualizations and a resulting genomic epidemiology visualization typology: GEViT

Accelerating tuberculosis elimination in low-incidence settings: the role of genomics

article

Adjutant: an R-based tool to support topic discovery for systematic and literature reviews

artículo científico publicado en 2019

Antibiotic resistance prediction for Mycobacterium tuberculosis from genome sequence data with Mykrobe

artículo científico publicado en 2019

Application of machine learning techniques to tuberculosis drug resistance analysis

scholarly article by Samaneh Kouchaki et al published 21 November 2018 in Bioinformatics

Assessing the precision of high-throughput computational and laboratory approaches for the genome-wide identification of protein subcellular localization in bacteria.

artículo científico publicado en 2005

Association between the 2008-09 seasonal influenza vaccine and pandemic H1N1 illness during Spring-Summer 2009: four observational studies from Canada

artículo científico publicado en 2010

Bayesian inference of infectious disease transmission from whole genome sequence data

article

Bayesian inference of infectious disease transmission from whole-genome sequence data

artículo científico publicado en 2014

Brain-derived neurotrophic factor concentration may not be depressed in chronic fatigue syndrome

article

Building the Framework for Standardized Clinical Laboratory Reporting of Next-generation Sequencing Data for Resistance-associated Mutations in Mycobacterium tuberculosis Complex

scientific article published on 01 October 2019

Cerebral: a Cytoscape plugin for layout of and interaction with biological networks using subcellular localization annotation.

artículo científico publicado en 2007

Cerebral: visualizing multiple experimental conditions on a graph with biological context

artículo científico publicado en 2008

Characterization of the upper respiratory tract microbiomes of patients with pandemic H1N1 influenza.

artículo científico publicado en 2013

Complete Genome Sequence of Mycobacterium chimaera SJ42, a Nonoutbreak Strain from an Immunocompromised Patient with Pulmonary Disease

artículo científico publicado en 2017

Complexities of targeting innate immunity to treat infection.

artículo científico publicado en 2007

Computer-aided biotechnology: from immuno-informatics to reverse vaccinology.

artículo científico publicado en 2008

Cross-lineage influenza B and heterologous influenza A antibody responses in vaccinated mice: immunologic interactions and B/Yamagata dominance

artículo científico publicado en 2012

Cross-reactive and vaccine-induced antibody to an emerging swine-origin variant of influenza A virus subtype H3N2 (H3N2v).

artículo científico publicado en 2012

Declaring a tuberculosis outbreak over with genomic epidemiology

artículo científico publicado en 2016

Declaring a tuberculosis outbreak over with genomic epidemiology

preprint, published 22 February 2016

Enabling a systems biology approach to immunology: focus on innate immunity

scientific article published on 08 May 2009

Estimates of influenza vaccine effectiveness for 2007-2008 from Canada's sentinel surveillance system: cross-protection against major and minor variants

artículo científico publicado en 2012

Evidence-based design and evaluation of a whole genome sequencing clinical report for the reference microbiology laboratory.

artículo científico publicado en 2018

GEViTRec: Data Reconnaissance Through Recommendation Using a Domain-Specific Visualization Prevalence Design Space

artículo científico publicado en 2021

Genetic determinants of cocaine-associated agranulocytosis.

artículo científico publicado en 2015

Genome Sequences of the Mycobacterium tuberculosis H37Rv-ptkA Deletion Mutant and Its Parental Strain

artículo científico publicado en 2017

Genome-wide identification of Pseudomonas aeruginosa exported proteins using a consensus computational strategy combined with a laboratory-based PhoA fusion screen

artículo científico publicado en 2005

Genomic Infectious Disease Epidemiology in Partially Sampled and Ongoing Outbreaks

artículo científico publicado en 2017

Genomic analysis identifies targets of convergent positive selection in drug-resistant Mycobacterium tuberculosis

artículo científico publicado en 2013

Genomic infectious disease epidemiology in partially sampled and ongoing outbreaks

scholarly article published 22 July 2016

Genotyping and Whole Genome Sequencing to Identify Tuberculosis Transmission to Pediatric Patients in British Columbia, Canada, 2005-2014.

artículo científico publicado en 2018

Immunosignature Analysis of Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS)

artículo científico publicado en 2018

InnateDB: facilitating systems-level analyses of the mammalian innate immune response.

artículo científico publicado en 2008

Investigation of disease outbreaks with genome sequencing

artículo científico publicado en 2012

Lyme Disease Diagnosed by Alternative Methods: A Phenotype Similar to That of Chronic Fatigue Syndrome

artículo científico publicado en 2015

MentaLiST - A fast MLST caller for large MLST schemes

artículo científico publicado en 2018

Metagenomic Investigation of Plasma in Individuals with ME/CFS Highlights the Importance of Technical Controls to Elucidate Contamination and Batch Effects

artículo científico publicado en 2016

Metagenomics for pathogen detection in public health

artículo científico publicado en 2013

Methods for predicting bacterial protein subcellular localization

artículo científico publicado en 2006

Methods for the Computational Prediction of Periplasmic Proteins

Modern contact investigation methods for enhancing tuberculosis control in aboriginal communities

artículo científico publicado en 2012

Molecular Epidemiology of Tuberculosis in British Columbia, Canada - A 10-Year Retrospective Study

artículo científico publicado en 2018

Mycobacterium chimaera : unraveling a mystery through genomics

scholarly article by Jennifer L Gardy published October 2017 in Lancet Infectious Diseases

Navigating transmission networks with genomics and phylogenetic trees

article

On Regulatory and Organizational Constraints in Visualization Design and Evaluation ⬇️

scholarly article published 2016

On the Mark? Responses to a Sting

article

PSORT-B: Improving protein subcellular localization prediction for Gram-negative bacteria

artículo científico publicado en 2003

PSORTdb: a protein subcellular localization database for bacteria

artículo científico publicado en 2005

Phylogenetic tree shapes resolve disease transmission patterns.

artículo científico publicado en 2014

Prediction of Susceptibility to First-Line Tuberculosis Drugs by DNA Sequencing

artículo científico publicado en 2018

RNA-Seq Analysis of Gene Expression, Viral Pathogen, and B-Cell/T-Cell Receptor Signatures in Complex Chronic Disease

artículo científico publicado en 2017

Real-time digital pathogen surveillance - the time is now.

artículo científico publicado en 2015

Recovery of 52 bacterial genomes from the fecal microbiome of the domestic cat ( <i>Felis catus</i> ) using Hi-C proximity ligation and shotgun metagenomics

artículo científico publicado en 2023

Robust TLR4-induced gene expression patterns are not an accurate indicator of human immunity.

artículo científico publicado en 2010

Self-rated health and reasons for non-vaccination against seasonal influenza in Canadian adults with asthma

artículo científico publicado en 2017

Stopping outbreaks with real-time genomic epidemiology

artículo científico publicado en 2014

Submaximal exercise testing with near-infrared spectroscopy in Myalgic Encephalomyelitis/Chronic Fatigue Syndrome patients compared to healthy controls: a case-control study

artículo científico publicado en 2015

Systems-level comparison of host responses induced by pandemic and seasonal influenza A H1N1 viruses in primary human type I-like alveolar epithelial cells in vitro

artículo científico publicado en 2010

Systems-level comparison of host-responses elicited by avian H5N1 and seasonal H1N1 influenza viruses in primary human macrophages.

artículo científico publicado en 2009

TB Transmission: Closing the Gaps

artículo científico publicado en 2018

The 2021 WHO catalogue of Mycobacterium tuberculosis complex mutations associated with drug resistance: a genotypic analysis

artículo científico publicado en 2022

The Integrated Rapid Infectious Disease Analysis (IRIDA) Platform

scholarly article published 31 July 2018

The commensal Streptococcus salivarius K12 downregulates the innate immune responses of human epithelial cells and promotes host-microbe homeostasis

artículo científico publicado en 2008

The problem with defining foreign birth as a risk factor in tuberculosis epidemiology studies

Towards a genomics-informed, real-time, global pathogen surveillance system

artículo científico publicado en 2017

Towards genomic prediction of drug resistance in tuberculosis.

artículo científico publicado en 2015

Translating phylogeny into action for HIV surveillance.

artículo científico publicado en 2016

Trust and the ethical challenges in the use of whole genome sequencing for tuberculosis surveillance: a qualitative study of stakeholder perspectives

scientific article published on 04 July 2019

Universal Genotyping for Tuberculosis Prevention Programs: a 5-Year Comparison with On-Request Genotyping.

artículo científico publicado en 2018

Universal genotyping reveals province-level differences in the molecular epidemiology of tuberculosis

Using Whole Genome Sequencing to Determine the Timing of Secondary Tuberculosis in British Columbia, Canada

artículo científico publicado en 2020

Virus genomics and evolution: the transformative effect of new technologies and multidisciplinary collaboration on virus research and outbreak management

artículo científico publicado en 2016

Whole blood human transcriptome and virome analysis of ME/CFS patients experiencing post-exertional malaise following cardiopulmonary exercise testing

artículo científico publicado en 2019

Whole genome sequencing of Mycobacterium tuberculosis: current standards and open issues

artículo científico publicado en 2019

Whole-Genome Sequencing of Measles Virus Genotypes H1 and D8 During Outbreaks of Infection Following the 2010 Olympic Winter Games Reveals Viral Transmission Routes

artículo científico publicado en 2015

Whole-genome sequencing and social-network analysis of a tuberculosis outbreak

artículo científico publicado en 2011

Within-host Mycobacterium tuberculosis diversity and its utility for inferences of transmission

article

Lista de obras de Jennifer Gardy

A brief primer on genomic epidemiology: lessons learned from Mycobacterium tuberculosis.

A metagenomic approach to investigate the microbial causes of myalgic encephalomyelitis/chronic fatigue syndrome: moving beyond XMRV.

A microbiological revolution meets an ancient disease: improving the management of tuberculosis with genomics

A sentinel platform to evaluate influenza vaccine effectiveness and new variant circulation, Canada 2010-2011 season

A systematic method for surveying data visualizations and a resulting genomic epidemiology visualization typology: GEViT

A systematic method for surveying data visualizations and a resulting genomic epidemiology visualization typology: GEViT

Accelerating tuberculosis elimination in low-incidence settings: the role of genomics

Adjutant: an R-based tool to support topic discovery for systematic and literature reviews

Adjutant: an R-based tool to support topic discovery for systematic and literature reviews

Antibiotic resistance prediction for Mycobacterium tuberculosis from genome sequence data with Mykrobe

Application of machine learning techniques to tuberculosis drug resistance analysis

Assessing the precision of high-throughput computational and laboratory approaches for the genome-wide identification of protein subcellular localization in bacteria.

Association between the 2008-09 seasonal influenza vaccine and pandemic H1N1 illness during Spring-Summer 2009: four observational studies from Canada

Bayesian inference of infectious disease transmission from whole genome sequence data

Bayesian inference of infectious disease transmission from whole-genome sequence data

Brain-derived neurotrophic factor concentration may not be depressed in chronic fatigue syndrome

Building the Framework for Standardized Clinical Laboratory Reporting of Next-generation Sequencing Data for Resistance-associated Mutations in Mycobacterium tuberculosis Complex

Cerebral: a Cytoscape plugin for layout of and interaction with biological networks using subcellular localization annotation.

Cerebral: visualizing multiple experimental conditions on a graph with biological context

Characterization of the upper respiratory tract microbiomes of patients with pandemic H1N1 influenza.

Complete Genome Sequence of Mycobacterium chimaera SJ42, a Nonoutbreak Strain from an Immunocompromised Patient with Pulmonary Disease

Complexities of targeting innate immunity to treat infection.

Computer-aided biotechnology: from immuno-informatics to reverse vaccinology.

Cross-lineage influenza B and heterologous influenza A antibody responses in vaccinated mice: immunologic interactions and B/Yamagata dominance

Cross-reactive and vaccine-induced antibody to an emerging swine-origin variant of influenza A virus subtype H3N2 (H3N2v).

Declaring a tuberculosis outbreak over with genomic epidemiology

Declaring a tuberculosis outbreak over with genomic epidemiology

Enabling a systems biology approach to immunology: focus on innate immunity

Estimates of influenza vaccine effectiveness for 2007-2008 from Canada's sentinel surveillance system: cross-protection against major and minor variants

Evidence-based design and evaluation of a whole genome sequencing clinical report for the reference microbiology laboratory.

GEViTRec: Data Reconnaissance Through Recommendation Using a Domain-Specific Visualization Prevalence Design Space

Genetic determinants of cocaine-associated agranulocytosis.

Genome Sequences of the Mycobacterium tuberculosis H37Rv-ptkA Deletion Mutant and Its Parental Strain

Genome-wide identification of Pseudomonas aeruginosa exported proteins using a consensus computational strategy combined with a laboratory-based PhoA fusion screen

Genomic Infectious Disease Epidemiology in Partially Sampled and Ongoing Outbreaks

Genomic analysis identifies targets of convergent positive selection in drug-resistant Mycobacterium tuberculosis

Genomic infectious disease epidemiology in partially sampled and ongoing outbreaks

Genotyping and Whole Genome Sequencing to Identify Tuberculosis Transmission to Pediatric Patients in British Columbia, Canada, 2005-2014.

Immunosignature Analysis of Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS)

InnateDB: facilitating systems-level analyses of the mammalian innate immune response.

Investigation of disease outbreaks with genome sequencing

Lyme Disease Diagnosed by Alternative Methods: A Phenotype Similar to That of Chronic Fatigue Syndrome

MentaLiST - A fast MLST caller for large MLST schemes

Metagenomic Investigation of Plasma in Individuals with ME/CFS Highlights the Importance of Technical Controls to Elucidate Contamination and Batch Effects

Metagenomics for pathogen detection in public health

Methods for predicting bacterial protein subcellular localization

Methods for the Computational Prediction of Periplasmic Proteins

Modern contact investigation methods for enhancing tuberculosis control in aboriginal communities

Molecular Epidemiology of Tuberculosis in British Columbia, Canada - A 10-Year Retrospective Study

Mycobacterium chimaera : unraveling a mystery through genomics

Navigating transmission networks with genomics and phylogenetic trees

On Regulatory and Organizational Constraints in Visualization Design and Evaluation ⬇️

On the Mark? Responses to a Sting

PSORT-B: Improving protein subcellular localization prediction for Gram-negative bacteria

PSORTdb: a protein subcellular localization database for bacteria

Phylogenetic tree shapes resolve disease transmission patterns.

Prediction of Susceptibility to First-Line Tuberculosis Drugs by DNA Sequencing

RNA-Seq Analysis of Gene Expression, Viral Pathogen, and B-Cell/T-Cell Receptor Signatures in Complex Chronic Disease

Real-time digital pathogen surveillance - the time is now.

Recovery of 52 bacterial genomes from the fecal microbiome of the domestic cat ( <i>Felis catus</i> ) using Hi-C proximity ligation and shotgun metagenomics

Robust TLR4-induced gene expression patterns are not an accurate indicator of human immunity.

Self-rated health and reasons for non-vaccination against seasonal influenza in Canadian adults with asthma

Stopping outbreaks with real-time genomic epidemiology

Submaximal exercise testing with near-infrared spectroscopy in Myalgic Encephalomyelitis/Chronic Fatigue Syndrome patients compared to healthy controls: a case-control study

Systems-level comparison of host responses induced by pandemic and seasonal influenza A H1N1 viruses in primary human type I-like alveolar epithelial cells in vitro

Systems-level comparison of host-responses elicited by avian H5N1 and seasonal H1N1 influenza viruses in primary human macrophages.

TB Transmission: Closing the Gaps

The 2021 WHO catalogue of Mycobacterium tuberculosis complex mutations associated with drug resistance: a genotypic analysis

The Integrated Rapid Infectious Disease Analysis (IRIDA) Platform

The commensal Streptococcus salivarius K12 downregulates the innate immune responses of human epithelial cells and promotes host-microbe homeostasis

The problem with defining foreign birth as a risk factor in tuberculosis epidemiology studies

Towards a genomics-informed, real-time, global pathogen surveillance system

Towards genomic prediction of drug resistance in tuberculosis.

Translating phylogeny into action for HIV surveillance.

Trust and the ethical challenges in the use of whole genome sequencing for tuberculosis surveillance: a qualitative study of stakeholder perspectives

Universal Genotyping for Tuberculosis Prevention Programs: a 5-Year Comparison with On-Request Genotyping.

Universal genotyping reveals province-level differences in the molecular epidemiology of tuberculosis

Using Whole Genome Sequencing to Determine the Timing of Secondary Tuberculosis in British Columbia, Canada

Virus genomics and evolution: the transformative effect of new technologies and multidisciplinary collaboration on virus research and outbreak management