Lista de obras - Russell Schwartz - Dominio Público Uruguay

"Local rules" theory applied to polyomavirus polymorphic capsid assemblies

artículo científico publicado en 2000

A Consensus Tree Approach for Reconstructing Human Evolutionary History and Detecting Population Substructure

artículo científico publicado en 2010

A Report of the Curriculum Task Force of the ISCB Education Committee

artículo científico

A comparative genomics approach to identifying the plasticity transcriptome.

artículo científico publicado en 2007

A consensus tree approach for reconstructing human evolutionary history and detecting population substructure

artículo científico publicado en 2011

A human genome-wide library of local phylogeny predictions for whole-genome inference problems

artículo científico publicado en 2008

A method for efficient Bayesian optimization of self-assembly systems from scattering data.

artículo científico publicado en 2018

A mixed integer linear programming model to reconstruct phylogenies from single nucleotide polymorphism haplotypes under the maximum parsimony criterion

artículo científico publicado en 2013

A parameter estimation technique for stochastic self-assembly systems and its application to human papillomavirus self-assembly

artículo científico publicado en 2010

A simplicial complex-based approach to unmixing tumor progression data

artículo científico publicado en 2015

Abstract 1934: Improved deconvolution of heterogeneous tumor data to reconstruct clonal evolution from bulk genomic samples

artículo científico publicado en 2015

Abstract 2182: Reconstructing evolutionary models of tumor progression from single-cell heterogeneity data

artículo científico publicado en 2015

Abstract 4833: Single-cell genetic analysis reveals insights into clonal development of cervical cancer and confirms TERC as an early and dominant aberration

artículo científico publicado en 2015

Algorithms for efficient near-perfect phylogenetic tree reconstruction in theory and practice

artículo científico publicado en 2007

Algorithms to model single gene, single chromosome, and whole genome copy number changes jointly in tumor phylogenetics

artículo científico publicado en 2014

An Optimization-Based Sampling Scheme for Phylogenetic Trees

artículo científico publicado en 2011

An optimization-based sampling scheme for phylogenetic trees

artículo científico publicado en 2011

Applying molecular crowding models to simulations of virus capsid assembly in vitro

artículo científico publicado en 2014

Applying unmixing to gene expression data for tumor phylogeny inference

artículo científico publicado en 2010

Applying, Evaluating and Refining Bioinformatics Core Competencies (An Update from the Curriculum Task Force of ISCB's Education Committee).

artículo científico publicado en 2016

Automated deconvolution of structured mixtures from heterogeneous tumor genomic data

artículo científico publicado en 2017

Bioinformatics curriculum guidelines: toward a definition of core competencies

artículo científico publicado en 2014

Biological colloid engineering: Self-assembly of dipolar ferromagnetic chains in a functionalized biogenic ferrofluid

artículo científico publicado en 2012

Classifying the Progression of Ductal Carcinoma from Single-Cell Sampled Data via Integer Linear Programming: A Case Study

artículo científico publicado en 2015

Coalescent-based method for learning parameters of admixture events from large-scale genetic variation data

artículo científico publicado en 2013

Coalescent-based method for learning parameters of admixture events from large-scale genetic variation data

artículo científico publicado en 2012

Comparative immunopeptidomics of humans and their pathogens

scholarly article

Computational biology and bioinformatics

artículo científico publicado en 2014

Computational models of molecular self-organization in cellular environments

artículo científico publicado en 2007

Derivative-Free Optimization of Rate Parameters of Capsid Assembly Models from Bulk in Vitro Data

artículo científico publicado en 2016

Direct maximum parsimony phylogeny reconstruction from genotype data

artículo científico publicado en 2007

Discrete, continuous, and stochastic models of protein sorting in the Golgi apparatus

artículo científico publicado en 2010

Efficient stochastic sampling of first-passage times with applications to self-assembly simulations

artículo científico publicado en 2008

Evaluating spatial constraints in cellular assembly processes using a monte carlo approach

artículo científico publicado en 2006

Evolution of genes and genomes on the Drosophila phylogeny

artículo científico publicado en 2007

Exploring the parameter space of complex self-assembly through virus capsid models

artículo científico publicado en 2007

FISHtrees 3.0: Tumor Phylogenetics Using a Ploidy Probe

artículo científico publicado en 2016

Fixed Parameter Tractability of Binary Near-Perfect Phylogenetic Tree Reconstruction

artículo científico publicado en 2006

Frequencies of amino acid strings in globular protein sequences indicate suppression of blocks of consecutive hydrophobic residues

artículo científico publicado en 2001

Frequencies of hydrophobic and hydrophilic runs and alternations in proteins of known structure

artículo científico publicado en 2006

Generalized Buneman Pruning for Inferring the Most Parsimonious Multi-state Phylogeny

artículo científico publicado en 2010

Generalized buneman pruning for inferring the most parsimonious multi-state phylogeny

artículo científico publicado en 2011

HER2 expression as a potential marker for response to therapy targeted to the EGFR.

artículo científico publicado en 2006

Haplotype parsing: methods for extracting information from human genetic variations

artículo científico publicado en 2004

Identification of novel mutations by exome sequencing in African American colorectal cancer patients

artículo científico publicado en 2014

Implementation of a Discrete Event Simulator For Biological Self-Assembly Systems

Inference of tumor phylogenies from genomic assays on heterogeneous samples

artículo científico publicado en 2012

Inference of tumor phylogenies from genomic assays on heterogeneous samples

artículo científico publicado en 2011

Inferring models of multiscale copy number evolution for single-tumor phylogenetics

artículo científico publicado en 2015

Investigating scaling effects on virus capsid-like self-assembly using discrete event simulations

artículo científico publicado en 2007

Machine Learning Approaches for Predicting Radiation Therapy Outcomes: A Clinician's Perspective

artículo científico publicado en 2015

Medoidshift clustering applied to genomic bulk tumor data

artículo científico publicado en 2016

Mixed Integer Linear Programming for Maximum-Parsimony Phylogeny Inference

artículo científico publicado en 2008

Modeling Effects of RNA on Capsid Assembly Pathways via Coarse-Grained Stochastic Simulation

artículo científico publicado en 2016

Modeling molecular interactions to understand spatial crowding effects on heterodimer formations

artículo científico publicado en 2007

Modeling nuclear blebs in a nucleoskeleton of independent filament networks

artículo científico publicado en 2011

Molecular crowding shapes gene expression in synthetic cellular nanosystems

artículo científico publicado en 2013

Network-Based Inference of Cancer Progression from Microarray Data

Network-based inference of cancer progression from microarray data

artículo científico publicado en 2009

Novel Multi-sample Scheme for Inferring Phylogenetic Markers from Whole Genome Tumor Profiles

artículo científico publicado en 2012

Novel multisample scheme for inferring phylogenetic markers from whole genome tumor profiles

artículo científico publicado en 2013

Optimal haplotype block-free selection of tagging SNPs for genome-wide association studies

artículo científico publicado en 2004

Parameter effects on binding chemistry in crowded media using a two-dimensional stochastic off-lattice model

artículo científico publicado en 2009

Pathway Complexity of Model Virus Capsid Assembly Systems

artículo científico publicado en 2008

Phylogenetic analysis of multiple FISH markers in oral tongue squamous cell carcinoma suggests that a diverse distribution of copy number changes is associated with poor prognosis

artículo científico publicado en 2015

Phylogenetic analysis of multiprobe fluorescence in situ hybridization data from tumor cell populations

artículo científico publicado en 2013

Queue-based method for efficient simulation of biological self-assembly systems

artículo científico publicado en 2005

Reference-free inference of tumor phylogenies from single-cell sequencing data

artículo científico publicado en 2015

Reply to 'Complexity of molecular crowding in cell-free enzymatic reaction networks'.

artículo científico publicado en 2014

Response of an Actin Filament Network Model Under Cyclic Stretching Through a Coarse Grained Monte Carlo Approach

artículo científico publicado en 2010

Response of an actin filament network model under cyclic stretching through a coarse grained Monte Carlo approach

artículo científico publicado en 2011

Robust unmixing of tumor states in array comparative genomic hybridization data

artículo científico publicado en 2010

Robustness of inference of haplotype block structure

artículo científico publicado en 2003

Simple Reconstruction of Binary Near-Perfect Phylogenetic Trees

artículo científico publicado en 2006

Simulated de novo assembly of golgi compartments by selective cargo capture during vesicle budding and targeted vesicle fusion

artículo científico publicado en 2008

Simulation study of the contribution of oligomer/oligomer binding to capsid assembly kinetics

artículo científico publicado en 2005

Single-cell genetic analysis of ductal carcinoma in situ and invasive breast cancer reveals enormous tumor heterogeneity yet conserved genomic imbalances and gain of MYC during progression.

artículo científico publicado en 2012

Single-cell genetic analysis reveals insights into clonal development of prostate cancers and indicates loss of PTEN as a marker of poor prognosis.

artículo científico publicado en 2014

Stochastic off-lattice modeling of molecular self-assembly in crowded environments by Green's function reaction dynamics

artículo científico publicado en 2008

Stochastic steady state gain in a gene expression process with mRNA degradation control

artículo científico publicado en 2012

Structurally governed cell mechanotransduction through multiscale modeling

artículo científico publicado en 2015

Surveying capsid assembly pathways through simulation-based data fitting

artículo científico publicado en 2012

The development and application of bioinformatics core competencies to improve bioinformatics training and education

artículo científico publicado en 2018

Three-dimensional stochastic off-lattice model of binding chemistry in crowded environments

artículo científico publicado en 2012

Tumor Phylogenetics in the NGS Era: Strategies, Challenges, and Future Prospects

artículo científico publicado en 2013

Unified regression model of binding equilibria in crowded environments

artículo científico publicado en 2011

Whole proteome pI values correlate with subcellular localizations of proteins for organisms within the three domains of life

artículo científico publicado en 2001

Lista de obras de Russell Schwartz

"Local rules" theory applied to polyomavirus polymorphic capsid assemblies

A Consensus Tree Approach for Reconstructing Human Evolutionary History and Detecting Population Substructure

A Report of the Curriculum Task Force of the ISCB Education Committee

A comparative genomics approach to identifying the plasticity transcriptome.

A consensus tree approach for reconstructing human evolutionary history and detecting population substructure

A human genome-wide library of local phylogeny predictions for whole-genome inference problems

A method for efficient Bayesian optimization of self-assembly systems from scattering data.

A mixed integer linear programming model to reconstruct phylogenies from single nucleotide polymorphism haplotypes under the maximum parsimony criterion

A parameter estimation technique for stochastic self-assembly systems and its application to human papillomavirus self-assembly

A simplicial complex-based approach to unmixing tumor progression data

Abstract 1934: Improved deconvolution of heterogeneous tumor data to reconstruct clonal evolution from bulk genomic samples

Abstract 2182: Reconstructing evolutionary models of tumor progression from single-cell heterogeneity data

Abstract 4833: Single-cell genetic analysis reveals insights into clonal development of cervical cancer and confirms TERC as an early and dominant aberration

Algorithms for efficient near-perfect phylogenetic tree reconstruction in theory and practice

Algorithms to model single gene, single chromosome, and whole genome copy number changes jointly in tumor phylogenetics

An Optimization-Based Sampling Scheme for Phylogenetic Trees

An optimization-based sampling scheme for phylogenetic trees

Applying molecular crowding models to simulations of virus capsid assembly in vitro

Applying unmixing to gene expression data for tumor phylogeny inference

Applying, Evaluating and Refining Bioinformatics Core Competencies (An Update from the Curriculum Task Force of ISCB's Education Committee).

Automated deconvolution of structured mixtures from heterogeneous tumor genomic data

Bioinformatics curriculum guidelines: toward a definition of core competencies

Biological colloid engineering: Self-assembly of dipolar ferromagnetic chains in a functionalized biogenic ferrofluid

Classifying the Progression of Ductal Carcinoma from Single-Cell Sampled Data via Integer Linear Programming: A Case Study

Coalescent-based method for learning parameters of admixture events from large-scale genetic variation data

Coalescent-based method for learning parameters of admixture events from large-scale genetic variation data

Comparative immunopeptidomics of humans and their pathogens

Computational biology and bioinformatics

Computational models of molecular self-organization in cellular environments

Derivative-Free Optimization of Rate Parameters of Capsid Assembly Models from Bulk in Vitro Data

Direct maximum parsimony phylogeny reconstruction from genotype data

Discrete, continuous, and stochastic models of protein sorting in the Golgi apparatus

Efficient stochastic sampling of first-passage times with applications to self-assembly simulations

Evaluating spatial constraints in cellular assembly processes using a monte carlo approach

Evolution of genes and genomes on the Drosophila phylogeny

Exploring the parameter space of complex self-assembly through virus capsid models

FISHtrees 3.0: Tumor Phylogenetics Using a Ploidy Probe

Fixed Parameter Tractability of Binary Near-Perfect Phylogenetic Tree Reconstruction

Frequencies of amino acid strings in globular protein sequences indicate suppression of blocks of consecutive hydrophobic residues

Frequencies of hydrophobic and hydrophilic runs and alternations in proteins of known structure

Generalized Buneman Pruning for Inferring the Most Parsimonious Multi-state Phylogeny

Generalized buneman pruning for inferring the most parsimonious multi-state phylogeny

HER2 expression as a potential marker for response to therapy targeted to the EGFR.

Haplotype parsing: methods for extracting information from human genetic variations

Identification of novel mutations by exome sequencing in African American colorectal cancer patients

Implementation of a Discrete Event Simulator For Biological Self-Assembly Systems

Inference of tumor phylogenies from genomic assays on heterogeneous samples

Inference of tumor phylogenies from genomic assays on heterogeneous samples

Inferring models of multiscale copy number evolution for single-tumor phylogenetics

Investigating scaling effects on virus capsid-like self-assembly using discrete event simulations

Machine Learning Approaches for Predicting Radiation Therapy Outcomes: A Clinician's Perspective

Medoidshift clustering applied to genomic bulk tumor data

Mixed Integer Linear Programming for Maximum-Parsimony Phylogeny Inference

Modeling Effects of RNA on Capsid Assembly Pathways via Coarse-Grained Stochastic Simulation

Modeling molecular interactions to understand spatial crowding effects on heterodimer formations

Modeling nuclear blebs in a nucleoskeleton of independent filament networks

Molecular crowding shapes gene expression in synthetic cellular nanosystems

Network-Based Inference of Cancer Progression from Microarray Data

Network-based inference of cancer progression from microarray data

Novel Multi-sample Scheme for Inferring Phylogenetic Markers from Whole Genome Tumor Profiles

Novel multisample scheme for inferring phylogenetic markers from whole genome tumor profiles

Optimal haplotype block-free selection of tagging SNPs for genome-wide association studies

Parameter effects on binding chemistry in crowded media using a two-dimensional stochastic off-lattice model

Pathway Complexity of Model Virus Capsid Assembly Systems

Phylogenetic analysis of multiple FISH markers in oral tongue squamous cell carcinoma suggests that a diverse distribution of copy number changes is associated with poor prognosis

Phylogenetic analysis of multiprobe fluorescence in situ hybridization data from tumor cell populations

Queue-based method for efficient simulation of biological self-assembly systems

Reference-free inference of tumor phylogenies from single-cell sequencing data

Reply to 'Complexity of molecular crowding in cell-free enzymatic reaction networks'.

Response of an Actin Filament Network Model Under Cyclic Stretching Through a Coarse Grained Monte Carlo Approach

Response of an actin filament network model under cyclic stretching through a coarse grained Monte Carlo approach

Robust unmixing of tumor states in array comparative genomic hybridization data

Robustness of inference of haplotype block structure

Simple Reconstruction of Binary Near-Perfect Phylogenetic Trees

Simulated de novo assembly of golgi compartments by selective cargo capture during vesicle budding and targeted vesicle fusion

Simulation study of the contribution of oligomer/oligomer binding to capsid assembly kinetics

Single-cell genetic analysis of ductal carcinoma in situ and invasive breast cancer reveals enormous tumor heterogeneity yet conserved genomic imbalances and gain of MYC during progression.

Single-cell genetic analysis reveals insights into clonal development of prostate cancers and indicates loss of PTEN as a marker of poor prognosis.

Stochastic off-lattice modeling of molecular self-assembly in crowded environments by Green's function reaction dynamics