Lista de obras - Ron Shamir - Dominio Público Uruguay

A Chemical-Distance-Based Test for Positive Darwinian Selection

A Note on the Fixed Parameter Tractability of the Gene-Duplication Problem ⬇️

artículo científico publicado el 1 de mayo de 2011

Advanced computational techniques for re-sequencing DNA with polymerase signaling assay arrays ⬇️

artículo científico publicado el 1 de octubre de 2003

CLICK and EXPANDER: a system for clustering and visualizing gene expression data

artículo científico publicado en 2003

CT-FOCS: a novel method for inferring cell type-specific enhancer-promoter maps

artículo científico publicado en 2022

Complexity and algorithms for copy-number evolution problems

artículo científico publicado en 2017

Constructing Logical Models of Gene Regulatory Networks by Integrating Transcription Factor–DNA Interactions with Expression Data: An Entropy-Based Approach ⬇️

artículo científico publicado el 1 de enero de 2012

Copy-Number Evolution Problems: Complexity and Algorithms

DEFOG: a practical scheme for deciphering families of genes

artículo científico publicado en 2002

Design of shortest double-stranded DNA sequences covering all k-mers with applications to protein-binding microarrays and synthetic enhancers

artículo científico publicado en 2015

Designing small universal k-mer hitting sets for improved analysis of high-throughput sequencing.

artículo científico publicado en 2017

Detecting excess radical replacements in phylogenetic trees

artículo científico publicado en 2003

Discovering statistically significant biclusters in gene expression data

artículo científico publicado en 2002

Dissection of a DNA-damage-induced transcriptional network using a combination of microarrays, RNA interference and computational promoter analysis

artículo científico publicado en 2005

Drosophila TRF2 is a preferential core promoter regulator

artículo científico publicado en 2014

Drugst.One — a plug-and-play solution for online systems medicine and network-based drug repurposing

artículo científico publicado en 2024

EXPANDER--an integrative program suite for microarray data analysis

artículo científico publicado en 2005

ElemeNT: a computational tool for detecting core promoter elements

artículo científico publicado en 2015

Environmental stresses disrupt telomere length homeostasis

artículo científico publicado en 2013

Evidence of TAF1 dysfunction in peripheral models of X-linked dystonia-parkinsonism

artículo científico

Examination of exhaustive cloning attempts reveals that C. elegans piRNAs, transposons, and repeat sequences are efficiently cloned in yeast, but not in bacteria

artículo científico publicado en 2014

Expander: from expression microarrays to networks and functions

artículo científico publicado en 2010

Extracting replicable associations across multiple studies: Empirical Bayes algorithms for controlling the false discovery rate.

artículo científico publicado en 2017

Gene expression signature of human cancer cell lines treated with the ras inhibitor salirasib (S-farnesylthiosalicylic acid).

artículo científico publicado en 2007

Genome-wide in silico identification of transcriptional regulators controlling the cell cycle in human cells

artículo científico publicado en 2003

Identification of protein complexes by comparative analysis of yeast and bacterial protein interaction data

artículo científico publicado en 2005

Inaccuracy of the log-rank approximation in cancer data analysis

scientific article published on 01 August 2019

Incomplete Directed Perfect Phylogeny

scholarly article by Itsik Pe'er et al published January 2004 in SIAM Journal on Computing

Integrated analysis of numerous heterogeneous gene expression profiles for detecting robust disease-specific biomarkers and proposing drug targets

artículo científico publicado en 2015

Large-scale analysis of chromosomal aberrations in cancer karyotypes reveals two distinct paths to aneuploidy ⬇️

artículo científico publicado el 29 de junio de 2011

MONET: Multi-omic module discovery by omic selection

scientific article published on 15 September 2020

MicroRNAs are essential for differentiation of the retinal pigmented epithelium and maturation of adjacent photoreceptors

artículo científico publicado en 2015

Network-Induced Classification Kernels for Gene Expression Profile Analysis ⬇️

artículo científico publicado el 1 de junio de 2012

Network-based prediction of protein function

artículo científico publicado en 2007

PROMO: an interactive tool for analyzing clinically-labeled multi-omic cancer datasets

scientific article published on 26 December 2019

Personalized prediction of adverse heart and kidney events using baseline and longitudinal data from SPRINT and ACCORD

scientific article published on 08 August 2019

PrtT-Regulated Proteins Secreted by Aspergillus fumigatus Activate MAPK Signaling in Exposed A549 Lung Cells Leading to Necrotic Cell Death ⬇️

artículo científico publicado el 11 de marzo de 2011

Reconstructing chain functions in genetic networks

artículo científico publicado en 2004

Revealing modularity and organization in the yeast molecular network by integrated analysis of highly heterogeneous genomewide data

artículo científico publicado en 2004

Strongly Polynomial Algorithms for the High Multiplicity Scheduling Problem

artículo científico publicado en 1991

TORQUE: topology-free querying of protein interaction networks

artículo científico publicado en 2009

The DOMINO web-server for active module identification analysis

artículo científico publicado en 2022

Topology-free querying of protein interaction networks

artículo científico publicado en 2010

Transcription Factor/microRNA Axis Blocks Melanoma Invasion Program by miR-211 Targeting NUAK1 ⬇️

artículo científico publicado el 9 de agosto de 2013

Transcription factor family-specific DNA shape readout revealed by quantitative specificity models.

artículo científico publicado en 2017

Transcriptional modulation induced by ionizing radiation: p53 remains a central player

artículo científico publicado en 2011

Lista de obras de Ron Shamir

A Chemical-Distance-Based Test for Positive Darwinian Selection

A Note on the Fixed Parameter Tractability of the Gene-Duplication Problem ⬇️

Advanced computational techniques for re-sequencing DNA with polymerase signaling assay arrays ⬇️

CLICK and EXPANDER: a system for clustering and visualizing gene expression data

CT-FOCS: a novel method for inferring cell type-specific enhancer-promoter maps

Complexity and algorithms for copy-number evolution problems

Constructing Logical Models of Gene Regulatory Networks by Integrating Transcription Factor–DNA Interactions with Expression Data: An Entropy-Based Approach ⬇️

Copy-Number Evolution Problems: Complexity and Algorithms

DEFOG: a practical scheme for deciphering families of genes

Design of shortest double-stranded DNA sequences covering all k-mers with applications to protein-binding microarrays and synthetic enhancers

Designing small universal k-mer hitting sets for improved analysis of high-throughput sequencing.

Detecting excess radical replacements in phylogenetic trees

Discovering statistically significant biclusters in gene expression data

Dissection of a DNA-damage-induced transcriptional network using a combination of microarrays, RNA interference and computational promoter analysis

Drosophila TRF2 is a preferential core promoter regulator

Drugst.One — a plug-and-play solution for online systems medicine and network-based drug repurposing

EXPANDER--an integrative program suite for microarray data analysis

ElemeNT: a computational tool for detecting core promoter elements

Environmental stresses disrupt telomere length homeostasis

Evidence of TAF1 dysfunction in peripheral models of X-linked dystonia-parkinsonism

Examination of exhaustive cloning attempts reveals that C. elegans piRNAs, transposons, and repeat sequences are efficiently cloned in yeast, but not in bacteria

Expander: from expression microarrays to networks and functions

Extracting replicable associations across multiple studies: Empirical Bayes algorithms for controlling the false discovery rate.

Gene expression signature of human cancer cell lines treated with the ras inhibitor salirasib (S-farnesylthiosalicylic acid).

Genome-wide in silico identification of transcriptional regulators controlling the cell cycle in human cells

Identification of protein complexes by comparative analysis of yeast and bacterial protein interaction data

Inaccuracy of the log-rank approximation in cancer data analysis

Incomplete Directed Perfect Phylogeny

Integrated analysis of numerous heterogeneous gene expression profiles for detecting robust disease-specific biomarkers and proposing drug targets

Large-scale analysis of chromosomal aberrations in cancer karyotypes reveals two distinct paths to aneuploidy ⬇️

MONET: Multi-omic module discovery by omic selection

MicroRNAs are essential for differentiation of the retinal pigmented epithelium and maturation of adjacent photoreceptors

Network-Induced Classification Kernels for Gene Expression Profile Analysis ⬇️

Network-based prediction of protein function

PROMO: an interactive tool for analyzing clinically-labeled multi-omic cancer datasets

Personalized prediction of adverse heart and kidney events using baseline and longitudinal data from SPRINT and ACCORD

PrtT-Regulated Proteins Secreted by Aspergillus fumigatus Activate MAPK Signaling in Exposed A549 Lung Cells Leading to Necrotic Cell Death ⬇️

Reconstructing chain functions in genetic networks

Revealing modularity and organization in the yeast molecular network by integrated analysis of highly heterogeneous genomewide data

Strongly Polynomial Algorithms for the High Multiplicity Scheduling Problem

TORQUE: topology-free querying of protein interaction networks

The DOMINO web-server for active module identification analysis

Topology-free querying of protein interaction networks

Transcription Factor/microRNA Axis Blocks Melanoma Invasion Program by miR-211 Targeting NUAK1 ⬇️

Transcription factor family-specific DNA shape readout revealed by quantitative specificity models.

Transcriptional modulation induced by ionizing radiation: p53 remains a central player