A genome-wide, machine learning-guided exploration of the cis-regulatory code involved in neuronal differentiation

A single-cell atlas of transcribedcis-regulatory elements in the human genome

Abundant capped RNAs are derived from mRNA cleavage at 3’UTR G-Quadruplexes

Antisense ncRNAs during early vertebrate development are divided in groups with distinct features

Antisense oligonucleotide-mediated perturbation of long non-coding RNA reveals functional features in stem cells and across cell types

Author response: The Human Cell Atlas

Breast cancer identity is defined by specialized enhancer sets via lysine deacetylation

CFC-seq: identification of full-length capped RNAs unveil enhancer-derived transcription

CapTrap-Seq: A platform-agnostic and quantitative approach for high-fidelity full-length RNA transcript sequencing

Cell type-specific intronic RNAs shape genome architecture during neuronal lineage specification

Chromatin organizer ASCL1 governs gene programs in thymic epithelial cells, defining immunological self

Decryption of sequence, structure, and functional features of SINE repeat elements in SINEUP non-coding RNA–mediated post-transcriptional gene regulation

Evidence of distal regulations orchestrated by RNAs initiating at short tandem repeats

Functional Annotation of Human Long Non-Coding RNAs via Molecular Phenotyping

Integrative Transcriptomics Reveals Layer 1 Astrocytes Altered in Schizophrenia

Internal Ribosome Entry Sites act as Effector Domain in linear and circular antisense long non-coding SINEUP RNAs

Ku limits aberrant mRNA splicing promoted by intronic antisense Alu elements

LETR1 is a lymphatic endothelial-specific lncRNA that governs cell proliferation and migration through KLF4 and SEMA3C

Low Quantity single strand CAGE (LQ-ssCAGE) maps regulatory enhancers and promoters

Low Quantity single strand CAGE protocol v1

Machine-driven parameter optimisation of biochemical reactions

Nanopore Long-Read Sequencing Unveils Genomic Disruptions in Alzheimer’s Disease

Profiling of transcribedcis-regulatory elements in single cells

RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions

RADIP technology comprehensively identifies H3K27me3-mediated RNA-chromatin interactions

Recombination of repeat elements generates somatic complexity in human genomes

Recounting the FANTOM Cage Associated Transcriptome

SINEUP long non-coding RNA acts via PTBP1 and HNRNPK to promote translational initiation assemblies

Single-cell analysis of human diversity in circulating immune cells

Single-cell transcriptomics, scRNA-Seq and C1 CAGE discovered distinct phases of pluripotency during naïve-to-primed conversion in mice

Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

Systematic identification of cis-interacting lncRNAs and their targets

The piRNA pathway sustains adult neurogenesis by reducing protein synthesis and cellular senescence