Lista de obras -

A Comprehensive Investigation of Active Learning Strategies for Conducting Anti-Cancer Drug Screening

scholarly article

A communal catalogue reveals Earth's multiscale microbial diversity

artículo científico publicado en 2017

AI Meets Exascale Computing: Advancing Cancer Research With Large-Scale High Performance Computing

scientific article published on 02 October 2019

AI-accelerated protein-ligand docking for SARS-CoV-2 is 100-fold faster with no significant change in detection

artículo científico publicado en 2023

Accessing the SEED genome databases via Web services API: tools for programmers

artículo científico publicado en 2010

Antimicrobial Resistance Prediction in PATRIC and RAST.

artículo científico publicado en 2016

Assembly, Annotation, and Comparative Genomics in PATRIC, the All Bacterial Bioinformatics Resource Center

artículo científico publicado en 2018

Building the blueprint of life ⬇️

artículo científico publicado el 1 de julio de 2010

Building the repertoire of dispensable chromosome regions in Bacillus subtilis entails major refinement of cognate large-scale metabolic model.

artículo científico publicado en 2012

CANDLE/Supervisor: a workflow framework for machine learning applied to cancer research

scholarly article by Justin M Wozniak et al published 21 December 2018 in BMC Bioinformatics

Computing and Applying Atomic Regulons to Understand Gene Expression and Regulation

artículo científico publicado en 2016

Connecting genotype to phenotype in the era of high-throughput sequencing.

artículo científico publicado en 2011

Consent insufficient for data release-Response

artículo científico publicado en 2019

Deep learning methods for drug response prediction in cancer: Predominant and emerging trends

artículo científico publicado en 2023

Detecting operons in bacterial genomes via visual representation learning

artículo científico publicado en 2021

Developing an in silico minimum inhibitory concentration panel test for Klebsiella pneumoniae

artículo científico publicado en 2018

Enhanced Co-Expression Extrapolation (COXEN) Gene Selection Method for Building Anti-Cancer Drug Response Prediction Models

scientific article published on 11 September 2020

Ensemble transfer learning for the prediction of anti-cancer drug response

artículo científico publicado en 2020

Essential genes on metabolic maps.

artículo científico publicado en 2006

Functional metagenomic profiling of nine biomes

artículo científico publicado en 2008

Functional metagenomic profiling of nine biomes

artículo científico publicado en 2008

Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains

artículo científico publicado en 2014

High-throughput comparison, functional annotation, and metabolic modeling of plant genomes using the PlantSEED resource

artículo científico publicado en 2014

High-throughput generation, optimization and analysis of genome-scale metabolic models

artículo científico publicado en 2010

IMPECCABLE: Integrated Modeling PipelinE for COVID Cure by Assessing Better LEads

artículo científico publicado en 2021

Identifying genomic islands with deep neural networks

artículo científico publicado en 2021

Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center

artículo científico publicado en 2016

KBase: The United States Department of Energy Systems Biology Knowledgebase

article

Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project

artículo científico publicado en 2010

Modeling central metabolism and energy biosynthesis across microbial life

artículo científico publicado en 2016

National Institute of Allergy and Infectious Diseases bioinformatics resource centers: new assets for pathogen informatics

artículo científico publicado en 2007

PATRIC as a unique resource for studying antimicrobial resistance.

artículo científico publicado en 2017

PATRIC, the bacterial bioinformatics database and analysis resource

artículo científico publicado en 2013

Pandemic drugs at pandemic speed: infrastructure for accelerating COVID-19 drug discovery with hybrid machine learning- and physics-based simulations on high-performance computers

artículo científico publicado en 2021

Performance, Energy, and Scalability Analysis and Improvement of Parallel Cancer Deep Learning CANDLE Benchmarks

artículo científico publicado en 2019

Predicting tumor cell line response to drug pairs with deep learning

artículo científico publicado en 2018

RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes

artículo científico publicado en 2015

Real time metagenomics: using k-mers to annotate metagenomes

artículo científico publicado en 2012

SEED servers: high-performance access to the SEED genomes, annotations, and metabolic models

artículo científico publicado en 2012

Scalable HPC & AI infrastructure for COVID-19 therapeutics

artículo científico publicado en 2021

Standardized metadata for human pathogen/vector genomic sequences

artículo científico publicado en 2014

The Earth Microbiome Project: Meeting report of the "1 EMP meeting on sample selection and acquisition" at Argonne National Laboratory October 6 2010.

artículo científico publicado en 2010

The Earth Microbiome Project: The Meeting Report for the 1st International Earth Microbiome Project Conference, Shenzhen, China, June 13th-15th 2011.

artículo científico publicado en 2011

The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes

artículo científico publicado en 2009

The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation

artículo científico publicado en 2006

The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities

artículo científico publicado en 2020

The RAST Server: rapid annotations using subsystems technology

artículo científico publicado en 2008

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST).

artículo científico publicado en 2013

The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes

artículo científico publicado en 2005

Toward unrestricted use of public genomic data:

artículo científico publicado en 2019

Trillion Parameter AI Serving Infrastructure for Scientific Discovery: A Survey and Vision

artículo científico publicado en 2024

Unlocking the potential of metagenomics through replicated experimental design

artículo científico publicado en 2012

Using machine learning to predict antimicrobial minimum inhibitory concentrations and associated genomic features for nontyphoidal

artículo científico publicado en 2019

iBsu1103: a new genome-scale metabolic model of Bacillus subtilis based on SEED annotations

scientific article published on 25 June 2009

Lista de obras de

A Comprehensive Investigation of Active Learning Strategies for Conducting Anti-Cancer Drug Screening

A communal catalogue reveals Earth's multiscale microbial diversity

AI Meets Exascale Computing: Advancing Cancer Research With Large-Scale High Performance Computing

AI-accelerated protein-ligand docking for SARS-CoV-2 is 100-fold faster with no significant change in detection

Accessing the SEED genome databases via Web services API: tools for programmers

Antimicrobial Resistance Prediction in PATRIC and RAST.

Assembly, Annotation, and Comparative Genomics in PATRIC, the All Bacterial Bioinformatics Resource Center

Building the blueprint of life ⬇️

Building the repertoire of dispensable chromosome regions in Bacillus subtilis entails major refinement of cognate large-scale metabolic model.

CANDLE/Supervisor: a workflow framework for machine learning applied to cancer research

Computing and Applying Atomic Regulons to Understand Gene Expression and Regulation

Connecting genotype to phenotype in the era of high-throughput sequencing.

Consent insufficient for data release-Response

Deep learning methods for drug response prediction in cancer: Predominant and emerging trends

Detecting operons in bacterial genomes via visual representation learning

Developing an in silico minimum inhibitory concentration panel test for Klebsiella pneumoniae

Enhanced Co-Expression Extrapolation (COXEN) Gene Selection Method for Building Anti-Cancer Drug Response Prediction Models

Ensemble transfer learning for the prediction of anti-cancer drug response

Essential genes on metabolic maps.

Functional metagenomic profiling of nine biomes

Functional metagenomic profiling of nine biomes

Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains

High-throughput comparison, functional annotation, and metabolic modeling of plant genomes using the PlantSEED resource

High-throughput generation, optimization and analysis of genome-scale metabolic models

IMPECCABLE: Integrated Modeling PipelinE for COVID Cure by Assessing Better LEads

Identifying genomic islands with deep neural networks

Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center

KBase: The United States Department of Energy Systems Biology Knowledgebase

Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project

Modeling central metabolism and energy biosynthesis across microbial life

National Institute of Allergy and Infectious Diseases bioinformatics resource centers: new assets for pathogen informatics

PATRIC as a unique resource for studying antimicrobial resistance.

PATRIC, the bacterial bioinformatics database and analysis resource

Pandemic drugs at pandemic speed: infrastructure for accelerating COVID-19 drug discovery with hybrid machine learning- and physics-based simulations on high-performance computers

Performance, Energy, and Scalability Analysis and Improvement of Parallel Cancer Deep Learning CANDLE Benchmarks

Predicting tumor cell line response to drug pairs with deep learning

RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes

Real time metagenomics: using k-mers to annotate metagenomes

SEED servers: high-performance access to the SEED genomes, annotations, and metabolic models

Scalable HPC &amp; AI infrastructure for COVID-19 therapeutics

Standardized metadata for human pathogen/vector genomic sequences

The Earth Microbiome Project: Meeting report of the "1 EMP meeting on sample selection and acquisition" at Argonne National Laboratory October 6 2010.

The Earth Microbiome Project: The Meeting Report for the 1st International Earth Microbiome Project Conference, Shenzhen, China, June 13th-15th 2011.

The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes

The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation

The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities

The RAST Server: rapid annotations using subsystems technology

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST).

The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes

Toward unrestricted use of public genomic data:

Trillion Parameter AI Serving Infrastructure for Scientific Discovery: A Survey and Vision

Unlocking the potential of metagenomics through replicated experimental design

Using machine learning to predict antimicrobial minimum inhibitory concentrations and associated genomic features for nontyphoidal

iBsu1103: a new genome-scale metabolic model of Bacillus subtilis based on SEED annotations

Scalable HPC & AI infrastructure for COVID-19 therapeutics