Lista de obras -

A versatile peptide pI calculator for phosphorylated and N-terminal acetylated peptides experimentally tested using peptide isoelectric focusing.

artículo científico publicado en 2008

An Augmented Multiple-Protease-Based Human Phosphopeptide Atlas.

artículo científico publicado en 2015

Analysis of the cGMP/cAMP interactome using a chemical proteomics approach in mammalian heart tissue validates sphingosine kinase type 1-interacting protein as a genuine and highly abundant AKAP.

artículo científico publicado en 2006

Comparative phosphoproteomics reveals evolutionary and functional conservation of phosphorylation across eukaryotes

artículo científico publicado en 2008

Current challenges in software solutions for mass spectrometry-based quantitative proteomics

artículo científico publicado en 2012

Daily rhythms in the cyanobacterium synechococcus elongatus probed by high-resolution mass spectrometry-based proteomics reveals a small defined set of cyclic proteins.

artículo científico publicado en 2014

Database independent proteomics analysis of the ostrich and human proteome.

artículo científico publicado en 2011

Deconvolution of overlapping isotopic clusters improves quantification of stable isotope-labeled peptides.

artículo científico publicado en 2011

Deep Proteome Profiling of Circulating Granulocytes Reveals Bactericidal/Permeability-Increasing Protein as a Biomarker for Severe Atherosclerotic Coronary Stenosis

Evaluating experimental bias and completeness in comparative phosphoproteomics analysis.

artículo científico publicado en 2011

Facilitating protein disulfide mapping by a combination of pepsin digestion, electron transfer higher energy dissociation (EThcD), and a dedicated search algorithm SlinkS.

artículo científico publicado en 2014

Highly robust, automated, and sensitive online TiO2-based phosphoproteomics applied to study endogenous phosphorylation in Drosophila melanogaster.

artículo científico publicado en 2007

Identification of enriched PTM crosstalk motifs from large-scale experimental data sets.

artículo científico publicado en 2013

Improving SRM assay development: a global comparison between triple quadrupole, ion trap, and higher energy CID peptide fragmentation spectra.

artículo científico publicado en 2011

In-depth qualitative and quantitative profiling of tyrosine phosphorylation using a combination of phosphopeptide immunoaffinity purification and stable isotope dimethyl labeling

artículo científico publicado en 2009

LysNDeNovo: an algorithm enabling de novo sequencing of Lys-N generated peptides fragmented by electron transfer dissociation

artículo científico publicado en 2010

Multiplexed proteomics mapping of yeast RNA polymerase II and III allows near-complete sequence coverage and reveals several novel phosphorylation sites

artículo científico publicado en 2008

On-the-fly targeted selection of labeled peptides in liquid chromatography/mass spectrometry based quantitative proteomics

artículo científico publicado en 2010

Online automated in vivo zebrafish phosphoproteomics: from large-scale analysis down to a single embryo

artículo científico publicado en 2008

Perturbation of the yeast N-acetyltransferase NatB induces elevation of protein phosphorylation levels

artículo científico publicado en 2010

Profiling of N-acetylated protein termini provides in-depth insights into the N-terminal nature of the proteome

artículo científico publicado en 2010

Protease bias in absolute protein quantitation

artículo científico publicado en 2012

Proteogenomic Features of the Highly Polymorphic Histidine-rich Glycoprotein (HRG) Arose Late in Evolution

Proteome Adaptation of Saccharomyces cerevisiae to Severe Calorie Restriction in Retentostat Cultures

article

Quantitative and qualitative proteome characteristics extracted from in-depth integrated genomics and proteomics analysis.

artículo científico publicado en 2013

Quantitative proteomics and transcriptomics of anaerobic and aerobic yeast cultures reveals post-transcriptional regulation of key cellular processes

artículo científico publicado en 2007

ROCK1 is a potential combinatorial drug target for BRAF mutant melanoma

artículo científico publicado en 2014

Resolving stoichiometries and oligomeric states of glutamate synthase protein complexes with curve fitting and simulation of electrospray mass spectra

article

RockerBox: analysis and filtering of massive proteomics search results.

artículo científico publicado en 2011

Spatial Organization in Protein Kinase A Signaling Emerged at the Base of Animal Evolution.

artículo científico publicado en 2015

StatQuant: a post-quantification analysis toolbox for improving quantitative mass spectrometry

artículo científico publicado en 2009

Targeted analysis of protein termini.

artículo científico publicado en 2007

The PRoteomics IDEntification (PRIDE) Converter 2 framework: an improved suite of tools to facilitate data submission to the PRIDE database and the ProteomeXchange consortium

artículo científico publicado en 2012

qcML: an exchange format for quality control metrics from mass spectrometry experiments

artículo científico

Lista de obras de

A versatile peptide pI calculator for phosphorylated and N-terminal acetylated peptides experimentally tested using peptide isoelectric focusing.

An Augmented Multiple-Protease-Based Human Phosphopeptide Atlas.

Analysis of the cGMP/cAMP interactome using a chemical proteomics approach in mammalian heart tissue validates sphingosine kinase type 1-interacting protein as a genuine and highly abundant AKAP.

Comparative phosphoproteomics reveals evolutionary and functional conservation of phosphorylation across eukaryotes

Current challenges in software solutions for mass spectrometry-based quantitative proteomics

Daily rhythms in the cyanobacterium synechococcus elongatus probed by high-resolution mass spectrometry-based proteomics reveals a small defined set of cyclic proteins.

Database independent proteomics analysis of the ostrich and human proteome.

Deconvolution of overlapping isotopic clusters improves quantification of stable isotope-labeled peptides.

Deep Proteome Profiling of Circulating Granulocytes Reveals Bactericidal/Permeability-Increasing Protein as a Biomarker for Severe Atherosclerotic Coronary Stenosis

Evaluating experimental bias and completeness in comparative phosphoproteomics analysis.

Facilitating protein disulfide mapping by a combination of pepsin digestion, electron transfer higher energy dissociation (EThcD), and a dedicated search algorithm SlinkS.

Highly robust, automated, and sensitive online TiO2-based phosphoproteomics applied to study endogenous phosphorylation in Drosophila melanogaster.

Identification of enriched PTM crosstalk motifs from large-scale experimental data sets.

Improving SRM assay development: a global comparison between triple quadrupole, ion trap, and higher energy CID peptide fragmentation spectra.

In-depth qualitative and quantitative profiling of tyrosine phosphorylation using a combination of phosphopeptide immunoaffinity purification and stable isotope dimethyl labeling

LysNDeNovo: an algorithm enabling de novo sequencing of Lys-N generated peptides fragmented by electron transfer dissociation

Multiplexed proteomics mapping of yeast RNA polymerase II and III allows near-complete sequence coverage and reveals several novel phosphorylation sites

On-the-fly targeted selection of labeled peptides in liquid chromatography/mass spectrometry based quantitative proteomics

Online automated in vivo zebrafish phosphoproteomics: from large-scale analysis down to a single embryo

Perturbation of the yeast N-acetyltransferase NatB induces elevation of protein phosphorylation levels

Profiling of N-acetylated protein termini provides in-depth insights into the N-terminal nature of the proteome

Protease bias in absolute protein quantitation

Proteogenomic Features of the Highly Polymorphic Histidine-rich Glycoprotein (HRG) Arose Late in Evolution

Proteome Adaptation of Saccharomyces cerevisiae to Severe Calorie Restriction in Retentostat Cultures

Quantitative and qualitative proteome characteristics extracted from in-depth integrated genomics and proteomics analysis.

Quantitative proteomics and transcriptomics of anaerobic and aerobic yeast cultures reveals post-transcriptional regulation of key cellular processes

ROCK1 is a potential combinatorial drug target for BRAF mutant melanoma

Resolving stoichiometries and oligomeric states of glutamate synthase protein complexes with curve fitting and simulation of electrospray mass spectra

RockerBox: analysis and filtering of massive proteomics search results.

Spatial Organization in Protein Kinase A Signaling Emerged at the Base of Animal Evolution.

StatQuant: a post-quantification analysis toolbox for improving quantitative mass spectrometry

Targeted analysis of protein termini.

The PRoteomics IDEntification (PRIDE) Converter 2 framework: an improved suite of tools to facilitate data submission to the PRIDE database and the ProteomeXchange consortium

qcML: an exchange format for quality control metrics from mass spectrometry experiments