Lista de obras - David C. Nickle - Dominio Público Uruguay

A large lung gene expression study identifying fibulin-5 as a novel player in tissue repair in COPD.

artículo científico publicado en 2014

A pro-inflammatory role for the Frizzled-8 receptor in chronic bronchitis

artículo científico publicado en 2016

Author Correction: New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries

scientific article published on 01 June 2019

CD8+ T-cell responses to different HIV proteins have discordant associations with viral load

artículo científico publicado en 2006

COPD GWAS variant at 19q13.2 in relation with DNA methylation and gene expression

artículo científico publicado en 2018

Characterization of drug resistance in antiretroviral-treated patients infected with HIV-1 CRF02_AG and AGK subtypes in Mali and Burkina Faso.

artículo científico publicado en 2008

Cloning and characterization of PDK4 on 7q21.3 encoding a fourth pyruvate dehydrogenase kinase isoenzyme in human

artículo científico publicado en 1996

Comparison of immunogen designs that optimize peptide coverage: reply to Fischer et al.

artículo científico publicado en 2008

Compartmentalization of human immunodeficiency virus type 1 between blood monocytes and CD4+ T cells during infection

artículo científico publicado en 2004

Consensus and Ancestral State HIV Vaccines

artículo científico publicado en 2003

Coping with viral diversity in HIV vaccine design

artículo científico publicado en 2007

Correction: Comparison of Immunogen Designs That Optimize Peptide Coverage: Reply to Fischer et al.

artículo científico publicado en 2008

Correction: Lung eQTLs to Help Reveal the Molecular Underpinnings of Asthma.

artículo científico publicado en 2012

Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations

artículo científico publicado en 2016

Curiously Modern DNA for a ``250 Million-Year-Old'' Bacterium ⬇️

artículo científico publicado el 1 de enero de 2002

DIVEIN: a web server to analyze phylogenies, sequence divergence, diversity, and informative sites

artículo científico publicado en 2010

Deficiency of FHL2 attenuates airway inflammation in mice and genetic variation associates with human bronchial hyper-responsiveness

artículo científico publicado en 2015

Differential lung tissue gene expression in males and females: implications for the susceptibility to develop COPD

scientific article published on 18 July 2019

Dissecting the genetics of chronic mucus hypersecretion in smokers with and without COPD.

artículo científico publicado en 2014

Diverse homologues of the archaeal repressor NrpR function similarly in nitrogen regulation

artículo científico publicado en 2007

Dual HIV-1 infection associated with rapid disease progression

artículo científico publicado en 2004

EVOLUTION OF INTRAHOST HIV-1 GENETIC DIVERSITY DURING CHRONIC INFECTION

article

Elbasvir-Grazoprevir to Treat Hepatitis C Virus Infection in Persons Receiving Opioid Agonist Therapy: A Randomized Trial.

artículo científico publicado en 2016

Emergence of resistance-associated variants after failed triple therapy with vaniprevir in treatment-experienced non-cirrhotic patients with hepatitis C-genotype 1 infection: A population and clonal analysis ⬇️

artículo científico publicado el 10 de junio de 2013

Evidence for Human Immunodeficiency Virus Type 1 Replication In Vivo in CD14 + Monocytes and Its Potential Role as a Source of Virus in Patients on Highly Active Antiretroviral Therapy ⬇️

artículo científico publicado el 1 de enero de 2002

Evolution of intrahost HIV-1 genetic diversity during chronic infection

artículo científico publicado en 2006

Evolutionary indicators of human immunodeficiency virus type 1 reservoirs and compartments

artículo científico publicado en 2003

Extensive intrasubtype recombination in South African human immunodeficiency virus type 1 subtype C infections

artículo científico publicado en 2007

Founder Effects in the Assessment of HIV Polymorphisms and HLA Allele Associations

artículo científico publicado en 2007

Gene expression network analysis provides potential targets against SARS-CoV-2

artículo científico publicado en 2020

Genetic characterization of rebounding human immunodeficiency virus type 1 in plasma during multiple interruptions of highly active antiretroviral therapy

artículo científico publicado en 2003

Genetic regulation of gene expression in the lung identifies CST3 and CD22 as potential causal genes for airflow obstruction

artículo científico publicado en 2014

Genetic regulation of gene expression of MIF family members in lung tissue

artículo científico publicado en 2020

Genetic variants associated with susceptibility to idiopathic pulmonary fibrosis in people of European ancestry: a genome-wide association study.

artículo científico publicado en 2017

Genome-Wide Association Study of Susceptibility to Idiopathic Pulmonary Fibrosis

scientific article published on 01 March 2020

Genome-Wide Interaction Analysis of Air Pollution Exposure and Childhood Asthma with Functional Follow-up

artículo científico publicado en 2016

Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets

artículo científico publicado en 2017

Genome-wide association study on the FEV1/FVC ratio in never-smokers identifies HHIP and FAM13A.

artículo científico publicado en 2016

Genome-wide genetic ancestry measurements to predict lung function in European populations

Genome-wide interaction study of gene-by-occupational exposures on respiratory symptoms

artículo científico publicado en 2018

HCV evolutionary genetics of SVR versus virologic failure assessed from the vaniprevir phase III registration trials

artículo científico publicado en 2016

HIV type 1 superinfection with a dual-tropic virus and rapid progression to AIDS: a case report.

artículo científico publicado en 2007

HIV-1 group M conserved elements vaccine

artículo científico publicado en 2007

HIV-1 over time: fitness loss or robustness gain?

article

HIV-1 superinfection in the antiretroviral therapy era: are seroconcordant sexual partners at risk?

artículo científico publicado en 2009

HIV-1 variation before seroconversion in men who have sex with men: analysis of acute/early HIV infection in the multicenter AIDS cohort study

artículo científico publicado en 2008

HIV-infected individuals receiving effective antiviral therapy for extended periods of time continually replenish their viral reservoir

artículo científico publicado en 2005

HIV-specific probabilistic models of protein evolution

artículo científico publicado en 2007

HLA class I-driven evolution of human immunodeficiency virus type 1 subtype c proteome: immune escape and viral load

artículo científico publicado en 2008

Hedgehog signaling in the airway epithelium of patients with chronic obstructive pulmonary disease

artículo científico publicado en 2019

Human Immunodeficiency Virus Type 1 Subtype B Ancestral Envelope Protein Is Functional and Elicits Neutralizing Antibodies in Rabbits Similar to Those Elicited by a Circulating Subtype B Envelope

artículo científico publicado en 2005

Human Lung Tissue Transcriptome: Influence of Sex and Age.

artículo científico publicado en 2016

Human PON2 gene at 7q21.3: cloning, multiple mRNA forms, and missense polymorphisms in the coding sequence

artículo científico publicado en 1998

Human fist evolution: a critique ⬇️

artículo científico publicado el 15 de junio de 2013

Human immunodeficiency virus type 1 bound to B cells: relationship to virus replicating in CD4+ T cells and circulating in plasma

artículo científico publicado en 2002

Human immunodeficiency virus type 1 env evolves toward ancestral states upon transmission to a new host.

artículo científico publicado en 2006

Identification of Susceptibility Genes of Adult Asthma in French Canadian Women

artículo científico publicado en 2016

Identification of susceptibility pathways for the role of chromosome 15q25.1 in modifying lung cancer risk

artículo científico publicado en 2018

Immunogen sequence: the fourth tier of AIDS vaccine design

artículo científico publicado en 2004

Importance and detection of virus reservoirs and compartments of HIV infection

artículo científico publicado en 2003

Improved coreceptor usage prediction and genotypic monitoring of R5-to-X4 transition by motif analysis of human immunodeficiency virus type 1 env V3 loop sequences

artículo científico publicado en 2003

Increased breadth and depth of cytotoxic T lymphocytes responses against HIV-1-B Nef by inclusion of epitope variant sequences

artículo científico publicado en 2011

Increased detection of HIV-specific T cell responses by combination of central sequences with comparable immunogenicity

article

Influence of random genetic drift on human immunodeficiency virus type 1 env evolution during chronic infection

artículo científico publicado en 2004

Integrative Genomics of Emphysema-Associated Genes Reveals Potential Disease Biomarkers

artículo científico publicado en 2017

Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes

artículo científico publicado en 2017

Latrophilin receptors: novel bronchodilator targets in asthma ⬇️

artículo científico publicado en 2016

Letermovir Resistance Analysis in a Clinical Trial of Cytomegalovirus Prophylaxis for Hematopoietic Stem Cell Transplant Recipients

scientific article published on 01 March 2020

Leveraging lung tissue transcriptome to uncover candidate causal genes in COPD genetic associations

artículo científico publicado en 2018

Long-term follow-up of patients receiving boceprevir for treatment of chronic hepatitis C.

artículo científico

Lung eQTLs to help reveal the molecular underpinnings of asthma

artículo científico publicado en 2012

Lung expression quantitative trait loci data set identifies important functional polymorphisms in the asthma-associated IL1RL1 region

artículo científico publicado en 2014

Lung tissue gene-expression signature for the ageing lung in COPD.

artículo científico publicado en 2017

Male genital tract compartmentalization of human immunodeficiency virus type 1 (HIV).

artículo científico publicado en 2008

Moderate-to-severe asthma in individuals of European ancestry: a genome-wide association study

artículo científico publicado en 2018

Molecular clock-like evolution of human immunodeficiency virus type 1.

artículo científico publicado en 2004

Molecular mechanisms underlying variations in lung function: a systems genetics analysis

artículo científico publicado en 2015

Multidrug-resistant, dual-tropic HIV-1 and rapid progression

artículo científico publicado en 2005

Multiethnic Meta-analysis Identifies New Loci for Pulmonary Function

Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function

scientific article published in Nature Communications

Neutralization of Diverse Human Cytomegalovirus Strains Conferred by Antibodies Targeting Viral gH/gL/pUL128-131 Pentameric Complex.

artículo científico publicado en 2017

New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries

artículo científico publicado en 2019

New genetic signals for lung function highlight pathways and pleiotropy, and chronic obstructive pulmonary disease associations across multiple ancestries

scholarly article published 12 June 2018

Novel Genes for Airway Wall Thickness Identified with Combined Genome-Wide Association and Expression Analyses

article

P17-14. Fitness-informed HIV-1 Gag-p24 vaccine design

article

PTTG1IP and MAML3, novel genomewide association study genes for severity of hyperresponsiveness in adult asthma

artículo científico publicado en 2016

Persistence of HIV in gut-associated lymphoid tissue despite long-term antiretroviral therapy

artículo científico publicado en 2008

Pervasive genomic recombination of HIV-1 in vivo

artículo científico publicado en 2004

Phenotypic and functional translation of IL1RL1 locus polymorphisms in lung tissue and asthmatic airway epithelium

artículo científico publicado en 2020

Phylogeography of a Wide-Ranging Desert Lizard, Gambelia wislizenii (Crotaphytidae)

artículo científico publicado en 1999

Polymorphisms associated with expression of BPIFA1/BPIFB1 and lung disease severity in cystic fibrosis

artículo científico publicado en 2015

Potential impact of recombination on sitewise approaches for detecting positive natural selection

scientific article published on 01 April 2003

Presenting plasma HIV RNA level and rate of CD4 T-cell decline

artículo científico publicado en 2007

Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank

artículo científico publicado en 2021

Protein meta-functional signatures from combining sequence, structure, evolution, and amino acid property information

artículo científico publicado en 2008

Protein-altering germline mutations implicate novel genes related to lung cancer development

scientific article published on 11 May 2020

Rare HLA drive additional HIV evolution compared to more frequent alleles

artículo científico publicado en 2009

Recognition of HIV-1 peptides by host CTL is related to HIV-1 similarity to human proteins

artículo científico publicado en 2007

Reconstruction and Function of Ancestral Center-of-Tree Human Immunodeficiency Virus Type 1 Proteins

artículo científico publicado en 2007

Refining susceptibility loci of chronic obstructive pulmonary disease with lung eqtls

artículo científico publicado en 2013

Responsiveness to Ipratropium Bromide in Male and Female Patients with Mild to Moderate Chronic Obstructive Pulmonary Disease.

artículo científico publicado en 2017

Screening for acute HIV infection: lessons learned

scientific article published on 20 December 2006

Selection for human immunodeficiency virus type 1 recombinants in a patient with rapid progression to AIDS.

artículo científico publicado en 2002

Selection on the human immunodeficiency virus type 1 proteome following primary infection

artículo científico publicado en 2006

Sixteen new lung function signals identified through 1000 Genomes Project reference panel imputation

artículo científico publicado en 2015

Sources of variation in ancestral sequence reconstruction for HIV-1 envelope genes

artículo científico publicado en 2006

Sulfatase modifying factor 1 (SUMF1) is associated with Chronic Obstructive Pulmonary Disease

artículo científico publicado en 2017

Surfactant protein D is a causal risk factor for COPD: results of Mendelian randomisation.

artículo científico publicado en 2017

Susceptibility genes for lung diseases in the major histocompatibility complex revealed by lung expression quantitative trait loci analysis

artículo científico publicado en 2016

Susceptibility loci for lung cancer are associated with mRNA levels of nearby genes in the lung.

artículo científico publicado en 2014

Targeting of a CD8 T Cell Env Epitope Presented by HLA-B*5802 Is Associated with Markers of HIV Disease Progression and Lack of Selection Pressure

article

The Overlap of Lung Tissue Transcriptome of Smoke Exposed Mice with Human Smoking and COPD

scientific article published in Scientific Reports

Understanding the role of the chromosome 15q25.1 in COPD through epigenetics and transcriptomics

artículo científico publicado en 2018

ViroBLAST: a stand-alone BLAST web server for flexible queries of multiple databases and user's datasets

artículo científico publicado en 2007

Virologic resistance analysis from a phase 2 study of MK-5172 combined with pegylated interferon/ribavirin in treatment-naive patients with hepatitis C virus genotype 1 infection

artículo científico publicado en 2014

Whole exome re-sequencing implicates CCDC38 and cilia structure and function in resistance to smoking related airflow obstruction.

artículo científico publicado en 2014

Lista de obras de David C. Nickle

A large lung gene expression study identifying fibulin-5 as a novel player in tissue repair in COPD.

A pro-inflammatory role for the Frizzled-8 receptor in chronic bronchitis

Author Correction: New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries

CD8+ T-cell responses to different HIV proteins have discordant associations with viral load

COPD GWAS variant at 19q13.2 in relation with DNA methylation and gene expression

Characterization of drug resistance in antiretroviral-treated patients infected with HIV-1 CRF02_AG and AGK subtypes in Mali and Burkina Faso.

Cloning and characterization of PDK4 on 7q21.3 encoding a fourth pyruvate dehydrogenase kinase isoenzyme in human

Comparison of immunogen designs that optimize peptide coverage: reply to Fischer et al.

Compartmentalization of human immunodeficiency virus type 1 between blood monocytes and CD4+ T cells during infection

Consensus and Ancestral State HIV Vaccines

Coping with viral diversity in HIV vaccine design

Correction: Comparison of Immunogen Designs That Optimize Peptide Coverage: Reply to Fischer et al.

Correction: Lung eQTLs to Help Reveal the Molecular Underpinnings of Asthma.

Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations

Curiously Modern DNA for a ``250 Million-Year-Old'' Bacterium ⬇️

DIVEIN: a web server to analyze phylogenies, sequence divergence, diversity, and informative sites

Deficiency of FHL2 attenuates airway inflammation in mice and genetic variation associates with human bronchial hyper-responsiveness

Differential lung tissue gene expression in males and females: implications for the susceptibility to develop COPD

Dissecting the genetics of chronic mucus hypersecretion in smokers with and without COPD.

Diverse homologues of the archaeal repressor NrpR function similarly in nitrogen regulation

Dual HIV-1 infection associated with rapid disease progression

EVOLUTION OF INTRAHOST HIV-1 GENETIC DIVERSITY DURING CHRONIC INFECTION

Elbasvir-Grazoprevir to Treat Hepatitis C Virus Infection in Persons Receiving Opioid Agonist Therapy: A Randomized Trial.

Emergence of resistance-associated variants after failed triple therapy with vaniprevir in treatment-experienced non-cirrhotic patients with hepatitis C-genotype 1 infection: A population and clonal analysis ⬇️

Evidence for Human Immunodeficiency Virus Type 1 Replication In Vivo in CD14 + Monocytes and Its Potential Role as a Source of Virus in Patients on Highly Active Antiretroviral Therapy ⬇️

Evolution of intrahost HIV-1 genetic diversity during chronic infection

Evolutionary indicators of human immunodeficiency virus type 1 reservoirs and compartments

Extensive intrasubtype recombination in South African human immunodeficiency virus type 1 subtype C infections

Founder Effects in the Assessment of HIV Polymorphisms and HLA Allele Associations

Gene expression network analysis provides potential targets against SARS-CoV-2

Genetic characterization of rebounding human immunodeficiency virus type 1 in plasma during multiple interruptions of highly active antiretroviral therapy

Genetic regulation of gene expression in the lung identifies CST3 and CD22 as potential causal genes for airflow obstruction

Genetic regulation of gene expression of MIF family members in lung tissue

Genetic variants associated with susceptibility to idiopathic pulmonary fibrosis in people of European ancestry: a genome-wide association study.

Genome-Wide Association Study of Susceptibility to Idiopathic Pulmonary Fibrosis

Genome-Wide Interaction Analysis of Air Pollution Exposure and Childhood Asthma with Functional Follow-up

Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets

Genome-wide association study on the FEV1/FVC ratio in never-smokers identifies HHIP and FAM13A.

Genome-wide genetic ancestry measurements to predict lung function in European populations

Genome-wide interaction study of gene-by-occupational exposures on respiratory symptoms

HCV evolutionary genetics of SVR versus virologic failure assessed from the vaniprevir phase III registration trials

HIV type 1 superinfection with a dual-tropic virus and rapid progression to AIDS: a case report.

HIV-1 group M conserved elements vaccine

HIV-1 over time: fitness loss or robustness gain?

HIV-1 superinfection in the antiretroviral therapy era: are seroconcordant sexual partners at risk?

HIV-1 variation before seroconversion in men who have sex with men: analysis of acute/early HIV infection in the multicenter AIDS cohort study

HIV-infected individuals receiving effective antiviral therapy for extended periods of time continually replenish their viral reservoir

HIV-specific probabilistic models of protein evolution

HLA class I-driven evolution of human immunodeficiency virus type 1 subtype c proteome: immune escape and viral load

Hedgehog signaling in the airway epithelium of patients with chronic obstructive pulmonary disease

Human Immunodeficiency Virus Type 1 Subtype B Ancestral Envelope Protein Is Functional and Elicits Neutralizing Antibodies in Rabbits Similar to Those Elicited by a Circulating Subtype B Envelope

Human Lung Tissue Transcriptome: Influence of Sex and Age.

Human PON2 gene at 7q21.3: cloning, multiple mRNA forms, and missense polymorphisms in the coding sequence

Human fist evolution: a critique ⬇️

Human immunodeficiency virus type 1 bound to B cells: relationship to virus replicating in CD4+ T cells and circulating in plasma

Human immunodeficiency virus type 1 env evolves toward ancestral states upon transmission to a new host.

Identification of Susceptibility Genes of Adult Asthma in French Canadian Women

Identification of susceptibility pathways for the role of chromosome 15q25.1 in modifying lung cancer risk

Immunogen sequence: the fourth tier of AIDS vaccine design

Importance and detection of virus reservoirs and compartments of HIV infection

Improved coreceptor usage prediction and genotypic monitoring of R5-to-X4 transition by motif analysis of human immunodeficiency virus type 1 env V3 loop sequences

Increased breadth and depth of cytotoxic T lymphocytes responses against HIV-1-B Nef by inclusion of epitope variant sequences

Increased detection of HIV-specific T cell responses by combination of central sequences with comparable immunogenicity

Influence of random genetic drift on human immunodeficiency virus type 1 env evolution during chronic infection

Integrative Genomics of Emphysema-Associated Genes Reveals Potential Disease Biomarkers

Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes

Latrophilin receptors: novel bronchodilator targets in asthma ⬇️

Letermovir Resistance Analysis in a Clinical Trial of Cytomegalovirus Prophylaxis for Hematopoietic Stem Cell Transplant Recipients

Leveraging lung tissue transcriptome to uncover candidate causal genes in COPD genetic associations

Long-term follow-up of patients receiving boceprevir for treatment of chronic hepatitis C.

Lung eQTLs to help reveal the molecular underpinnings of asthma

Lung expression quantitative trait loci data set identifies important functional polymorphisms in the asthma-associated IL1RL1 region

Lung tissue gene-expression signature for the ageing lung in COPD.

Male genital tract compartmentalization of human immunodeficiency virus type 1 (HIV).

Moderate-to-severe asthma in individuals of European ancestry: a genome-wide association study

Molecular clock-like evolution of human immunodeficiency virus type 1.

Molecular mechanisms underlying variations in lung function: a systems genetics analysis

Multidrug-resistant, dual-tropic HIV-1 and rapid progression

Multiethnic Meta-analysis Identifies New Loci for Pulmonary Function