Lista de obras - Erik Aurell - Dominio Público Uruguay

A computational study of lambda-lac mutants

artículo científico publicado en 2009

A simple and efficient method to search for selected primary transcripts: non-coding and antisense RNAs in the human pathogen Enterococcus faecalis ⬇️

artículo científico publicado el 25 de enero de 2011

Advective-diffusive motion on large scales from small-scale dynamics with an internal symmetry. ⬇️

artículo científico publicado en 2016

Anomalous thermodynamics at the microscale

artículo científico publicado en 2012

Behavior of heuristics on large and hard satisfiability problems

artículo científico publicado en 2006

Binary tree models of high-Reynolds-number turbulence

Boundary layers in stochastic thermodynamics ⬇️

artículo científico publicado el 6 de febrero de 2012

Characteristic functions of quantum heat with baths at different temperatures

scientific article published on 01 June 2018

Circumspect descent prevails in solving random constraint satisfaction problems.

artículo científico publicado en 2008

Comparing Beliefs, Surveys, and Random Walks ⬇️

artículo científico publicado en 2005

Cooperative action in eukaryotic gene regulation: physical properties of a viral example

artículo científico publicado en 2007

DCA for genome-wide epistasis analysis: the statistical genetics perspective

scientific article published on 29 January 2019

Detection and quantitative estimation of spurious double stranded DNA formation during reverse transcription in bacteria using tagRNA-seq

artículo científico publicado en 2015

Dynamic insights on transcription initiation and RNA processing during bacterial adaptation

artículo científico publicado en 2020

Dynamic mean-field and cavity methods for diluted Ising systems ⬇️

artículo científico publicado el 16 de marzo de 2012

Dynamic message-passing approach for kinetic spin models with reversible dynamics

artículo científico publicado en 2015

Dynamics inside the cancer cell attractor reveal cell heterogeneity, limits of stability, and escape

artículo científico publicado en 2016

Entropy production of a Brownian ellipsoid in the overdamped limit. ⬇️

artículo científico publicado en 2016

Epstein-Barr virus latency switch in human B-cells: a physico-chemical model

artículo científico publicado en 2007

Erratum: Characteristic functions of quantum heat with baths at different temperatures [Phys. Rev. E 97, 062117 (2018)]

scientific article published on 01 September 2019

Exploring the diluted ferromagnetic p-spin model with a cavity master equation

artículo científico publicado en 2018

Fröhlich-coupled qubits interacting with fermionic baths

scientific article published on 01 July 2020

Global analysis of more than 50,000 SARS-CoV-2 genomes reveals epistasis between eight viral genes

scientific article published on 17 November 2020

Global gene expression analysis by combinatorial optimization

artículo científico publicado en 2004

Global picture of self-similar and non-self-similar decay in Burgers turbulence

artículo científico publicado en 2005

Hierarchical tree-model of 2D-turbulence

artículo científico publicado en 1994

Improved contact prediction in proteins: using pseudolikelihoods to infer Potts models

artículo científico publicado en 2013

Improving contact prediction along three dimensions ⬇️

artículo científico publicado en 2014

Inferring genetic fitness from genomic data

artículo científico publicado en 2020

Inferring network connectivity using kinetic Ising models

Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis

artículo científico publicado en 2017

Inverse Ising Inference Using All the Data ⬇️

artículo científico publicado el 2 de marzo de 2012

Landscape of RNA polyadenylation in E. coli

artículo científico publicado en 2017

Large deviations and fluctuation theorem for the quantum heat current in the spin-boson model

artículo científico publicado en 2020

Local search methods based on variable focusing for random K-satisfiability

artículo científico publicado en 2015

Maximum Likelihood Reconstruction for Ising Models with Asynchronous Updates ⬇️

artículo científico publicado el 20 de mayo de 2013

Mechanisms for lateral turns in lamprey in response to descending unilateral commands: a modeling study

artículo científico publicado en 2002

Network inference using asynchronously updated kinetic Ising model ⬇️

artículo científico publicado el 29 de abril de 2011

Optimal Protocols and Optimal Transport in Stochastic Thermodynamics ⬇️

artículo científico publicado el 20 de junio de 2011

Quasi-potential landscape in complex multi-stable systems ⬇️

artículo científico publicado el 29 de agosto de 2012

Refined Second Law of Thermodynamics for Fast Random Processes

artículo científico publicado en 2012

SEK: sparsity exploiting k-mer-based estimation of bacterial community composition ⬇️

artículo científico publicado en 2014

Self-preservation of large-scale structures in Burgers' turbulence

artículo científico publicado en 1993

Stability puzzles in phage lambda

scientific article published on 16 May 2002

Statistical physics of pairwise probability models

artículo científico publicado en 2009

Steady diffusion in a drift field: A comparison of large-deviation techniques and multiple-scale analysis.

artículo científico publicado en 2017

Systems biology is taking off.

artículo científico publicado en 2003

The Maximum Entropy Fallacy Redux?

artículo científico publicado en 2016

The bulk and the tail of minimal absent words in genome sequences ⬇️

artículo científico publicado en 2016

The stochastic thermodynamics of a rotating Brownian particle in a gradient flow

artículo científico publicado en 2015

Theory of Nonequilibrium Local Search on Random Satisfaction Problems

scientific article published on 01 December 2019

Thermal power of heat flow through a qubit

artículo científico publicado en 2019

Time reversals of irreversible quantum maps ⬇️

artículo científico publicado en 2015

Transcription factor concentrations versus binding site affinities in the yeast S. cerevisiae

artículo científico publicado en 2007

Unified picture of strong-coupling stochastic thermodynamics and time reversals

scientific article published on 01 April 2018

Whole-genome mapping of 5' RNA ends in bacteria by tagged sequencing: a comprehensive view in Enterococcus faecalis ⬇️

artículo científico publicado en 2015

Witness of unsatisfiability for a random 3-satisfiability formula

artículo científico publicado en 2013

Lista de obras de Erik Aurell

A computational study of lambda-lac mutants

A simple and efficient method to search for selected primary transcripts: non-coding and antisense RNAs in the human pathogen Enterococcus faecalis ⬇️

Advective-diffusive motion on large scales from small-scale dynamics with an internal symmetry. ⬇️

Anomalous thermodynamics at the microscale

Behavior of heuristics on large and hard satisfiability problems

Binary tree models of high-Reynolds-number turbulence

Boundary layers in stochastic thermodynamics ⬇️

Characteristic functions of quantum heat with baths at different temperatures

Circumspect descent prevails in solving random constraint satisfaction problems.

Comparing Beliefs, Surveys, and Random Walks ⬇️

Cooperative action in eukaryotic gene regulation: physical properties of a viral example

DCA for genome-wide epistasis analysis: the statistical genetics perspective

Detection and quantitative estimation of spurious double stranded DNA formation during reverse transcription in bacteria using tagRNA-seq

Dynamic insights on transcription initiation and RNA processing during bacterial adaptation

Dynamic mean-field and cavity methods for diluted Ising systems ⬇️

Dynamic message-passing approach for kinetic spin models with reversible dynamics

Dynamics inside the cancer cell attractor reveal cell heterogeneity, limits of stability, and escape

Entropy production of a Brownian ellipsoid in the overdamped limit. ⬇️

Epstein-Barr virus latency switch in human B-cells: a physico-chemical model

Erratum: Characteristic functions of quantum heat with baths at different temperatures [Phys. Rev. E 97, 062117 (2018)]

Exploring the diluted ferromagnetic p-spin model with a cavity master equation

Fröhlich-coupled qubits interacting with fermionic baths

Global analysis of more than 50,000 SARS-CoV-2 genomes reveals epistasis between eight viral genes

Global gene expression analysis by combinatorial optimization

Global picture of self-similar and non-self-similar decay in Burgers turbulence

Hierarchical tree-model of 2D-turbulence

Improved contact prediction in proteins: using pseudolikelihoods to infer Potts models

Improving contact prediction along three dimensions ⬇️

Inferring genetic fitness from genomic data

Inferring network connectivity using kinetic Ising models

Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis

Inverse Ising Inference Using All the Data ⬇️

Landscape of RNA polyadenylation in E. coli

Large deviations and fluctuation theorem for the quantum heat current in the spin-boson model

Local search methods based on variable focusing for random K-satisfiability

Maximum Likelihood Reconstruction for Ising Models with Asynchronous Updates ⬇️

Mechanisms for lateral turns in lamprey in response to descending unilateral commands: a modeling study

Network inference using asynchronously updated kinetic Ising model ⬇️

Optimal Protocols and Optimal Transport in Stochastic Thermodynamics ⬇️

Quasi-potential landscape in complex multi-stable systems ⬇️

Refined Second Law of Thermodynamics for Fast Random Processes

SEK: sparsity exploiting k-mer-based estimation of bacterial community composition ⬇️

Self-preservation of large-scale structures in Burgers' turbulence

Stability puzzles in phage lambda

Statistical physics of pairwise probability models

Steady diffusion in a drift field: A comparison of large-deviation techniques and multiple-scale analysis.

Systems biology is taking off.

The Maximum Entropy Fallacy Redux?

The bulk and the tail of minimal absent words in genome sequences ⬇️

The stochastic thermodynamics of a rotating Brownian particle in a gradient flow

Theory of Nonequilibrium Local Search on Random Satisfaction Problems

Thermal power of heat flow through a qubit

Time reversals of irreversible quantum maps ⬇️

Transcription factor concentrations versus binding site affinities in the yeast S. cerevisiae

Unified picture of strong-coupling stochastic thermodynamics and time reversals

Whole-genome mapping of 5' RNA ends in bacteria by tagged sequencing: a comprehensive view in Enterococcus faecalis ⬇️

Witness of unsatisfiability for a random 3-satisfiability formula